Miyakogusa Predicted Gene

Lj0g3v0259479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259479.1 tr|G7LES7|G7LES7_MEDTR Tubby-like F-box protein
OS=Medicago truncatula GN=MTR_8g077680 PE=4 SV=1,82.6,0,TGF BETA
RECEPTOR ASSOCIATED PROTEIN RELATED,NULL; CNH DOMAIN CONTAINING,NULL;
seg,NULL; Vps39_1,Vac,CUFF.17092.1
         (636 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077680.1 | vam6/Vps39-like protein | HC | chr8:33049752-3...   938   0.0  
Medtr5g020140.1 | vam6/Vps39-like protein | HC | chr5:7674026-76...   754   0.0  
Medtr5g020140.2 | vam6/Vps39-like protein | HC | chr5:7673955-76...   711   0.0  
Medtr8g072800.1 | vacuolar sorting protein 39 domain 1 protein |...    71   4e-12

>Medtr8g077680.1 | vam6/Vps39-like protein | HC |
           chr8:33049752-33042308 | 20130731
          Length = 992

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/592 (78%), Positives = 508/592 (85%), Gaps = 5/592 (0%)

Query: 1   MCWCGENVCLGIRKEYMILNATNGALSEVFTSGRIAPPLVVSLPYGELLLGKENIGVIVD 60
           M WCGEN+CLGIRK Y+ILNAT+G++SEVFTSGR+APPLVVSLP GELLLGK+NIGVIVD
Sbjct: 157 MSWCGENICLGIRKAYVILNATSGSISEVFTSGRLAPPLVVSLPSGELLLGKDNIGVIVD 216

Query: 61  QNGKLRPEGRICWSEAPAEVVIPKPYAIALLPRFVEIRSLRAPYPLIQTIVLRNVRHIRQ 120
           QNGKLRPEGRICWSEAP EVVI  PYA+ALLPRFVEIRSLR PYPLIQTIV RNVRH+RQ
Sbjct: 217 QNGKLRPEGRICWSEAPTEVVIQNPYALALLPRFVEIRSLRGPYPLIQTIVFRNVRHLRQ 276

Query: 121 SNNSVILVLENSVHGLFPVPLGVQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEGSIH 180
           SNNSVI+ LENS+H LFPVPLG QIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKE SIH
Sbjct: 277 SNNSVIIALENSIHCLFPVPLGAQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEDSIH 336

Query: 181 IRYAHHLFDNCSYEEAMEHFLESQVDITYVLSLYPSIILPKTTIVHEPEKFMDIFEDALC 240
           IRYAH+LFDN SYEE+MEHFL SQVDITYVLSLY SIILPKTTIVH+ +K +DIF D L 
Sbjct: 337 IRYAHYLFDNGSYEESMEHFLASQVDITYVLSLYTSIILPKTTIVHDSDK-LDIFGDPLH 395

Query: 241 LSRGSSTMSDDMEPSPASHISESDENAELESKKMSHNMLMALIKFLHKKRYSVIEKATAE 300
           LSRGSS MSDDMEPS AS++SE D+NAELESKKMSHNMLMALIKFLHKKR+S+IEKATAE
Sbjct: 396 LSRGSS-MSDDMEPSSASNMSELDDNAELESKKMSHNMLMALIKFLHKKRHSIIEKATAE 454

Query: 301 GTEEVVLDAVGDNFASYNSSRHKKITKGRGSTSISSVAREMASVXXXXXXXXXXXXXXXX 360
           GTEEVV DAVG+NF SYNS+R KKI K  GS  +SS AREMAS+                
Sbjct: 455 GTEEVVFDAVGNNFESYNSNRFKKINKRHGSIPVSSEAREMASILDTALLQAMLLTGQPS 514

Query: 361 XAEDLLGDLNYCDLKICEEILKEGGYLVALVELYKCNSMHREALELVHKLVKD---GQSE 417
            AE+LL  LNYCDLKICEEIL+EG Y V+LVELYKCNSMHREALE+++K VK+    QS+
Sbjct: 515 MAENLLRVLNYCDLKICEEILQEGSYHVSLVELYKCNSMHREALEIINKSVKESESSQSK 574

Query: 418 IAHKFKPETIIEYLKPLCETDPTXXXXXXXXXXXXNPTQTIELFLSGNIPAHMVNSYLKQ 477
           IAH+FKPE IIEYLKPLCE D T             PTQTIELFLSGNIPA MVN YLKQ
Sbjct: 575 IAHRFKPEAIIEYLKPLCELDTTLVLEYSMLVLESCPTQTIELFLSGNIPADMVNLYLKQ 634

Query: 478 HAPNLQATYLELMLAMNEDAVSGNLQNEMVQVYLSEVLDWQADLSSQGKWDEKVYSPKRN 537
           HAPNLQATYLEL+L+MNE AVSG LQNEMV +YLSEVLDW ADLSS+ KWDEKVYSPKR 
Sbjct: 635 HAPNLQATYLELVLSMNEGAVSGTLQNEMVHLYLSEVLDWHADLSSEQKWDEKVYSPKRK 694

Query: 538 KLLSALESMSGYNPEALLKRLPSDALYEERAILLGKMNQHELTLSLYVHKIY 589
           KLLSALES+SGYNPEALLK LPSDALYEERAILLGKMNQHEL LSLYVHK++
Sbjct: 695 KLLSALESISGYNPEALLKLLPSDALYEERAILLGKMNQHELALSLYVHKLH 746


>Medtr5g020140.1 | vam6/Vps39-like protein | HC |
           chr5:7674026-7681682 | 20130731
          Length = 899

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/512 (73%), Positives = 422/512 (82%), Gaps = 12/512 (2%)

Query: 1   MCWCGENVCLGIRKEYMILNATNGALSEVFTSGRIAPPLVVSLPYGELLLGKENIGVIVD 60
           M WCGEN+CLGIR+EY+ILNA+NGALSEVFTSGR+APPLVV +P GELLLGKENIGV VD
Sbjct: 153 MSWCGENICLGIRREYVILNASNGALSEVFTSGRLAPPLVVPIPSGELLLGKENIGVFVD 212

Query: 61  QNGKLRPEGRICWSEAPAEVVIPKPYAIALLPRFVEIRSLRAPYPLIQTIVLRNVRHIRQ 120
           QNGKL PEGRICWSEAP EVVI KPYAIALLPRFVEIRSLR PYPLIQTIVLRNVRH+ Q
Sbjct: 213 QNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHLCQ 272

Query: 121 SNNSVILVLENSVHGLFPVPLGVQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEGSIH 180
           S+NSVIL L+NS+ GLFPVPLG QIVQLTA+GNFEEALSLCKLLPPEDS+LRAAKEGSIH
Sbjct: 273 SSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIH 332

Query: 181 IRYAHHLFDNCSYEEAMEHFLESQVDITYVLSLYPSIILPKTTIVHEPEKFMDIFEDALC 240
           IRYAH+LF+N SYEEA+EHFLESQVDITYVLSLYPSIILPKTTIVHEPEK +DI  DA  
Sbjct: 333 IRYAHYLFENGSYEEAVEHFLESQVDITYVLSLYPSIILPKTTIVHEPEK-LDIDGDASY 391

Query: 241 LSRGSSTMSDDMEPSPASHISESDENAELESKKMSHNMLMALIKFLHKKRYSVIEKATAE 300
           LSR SS +SDDMEP P      +DENA LESKK +HNMLMALIK+L KKR + IEKATAE
Sbjct: 392 LSRVSSGVSDDMEPLP------TDENAALESKKTNHNMLMALIKYLQKKRGNFIEKATAE 445

Query: 301 GTEEVVLDAVGDNFASYNSSRHKKITKGRGSTSISSVAREMASVXXXXXXXXXXXXXXXX 360
           GTEEVVLDAVGDN+ASYN  R KK  KGRG+ S+ S AREMAS+                
Sbjct: 446 GTEEVVLDAVGDNYASYN--RFKKANKGRGNISVGSGAREMASILDTALLQALLLTGQSS 503

Query: 361 XAEDLLGDLNYCDLKICEEILKEGGYLVALVELYKCNSMHREALELVHKLV---KDGQSE 417
            A ++L  +NYCD+KICEEIL++G    AL+ELYKC S+HR+ALEL+HKLV   +  QSE
Sbjct: 504 AALEILRGVNYCDMKICEEILRKGNLNAALLELYKCKSLHRQALELLHKLVDESRSSQSE 563

Query: 418 IAHKFKPETIIEYLKPLCETDPTXXXXXXXXXXXXNPTQTIELFLSGNIPAHMVNSYLKQ 477
           I  +FKPE I+EYLKPLCETDP              P+QTIELFLSGNIPA MVNSYLKQ
Sbjct: 564 ITQRFKPEDIVEYLKPLCETDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQ 623

Query: 478 HAPNLQATYLELMLAMNEDAVSGNLQNEMVQV 509
           H+PN+QA YLELMLAMNE+A+SGNLQNEM+ V
Sbjct: 624 HSPNMQARYLELMLAMNENAISGNLQNEMLHV 655


>Medtr5g020140.2 | vam6/Vps39-like protein | HC |
           chr5:7673955-7681747 | 20130731
          Length = 749

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/498 (71%), Positives = 406/498 (81%), Gaps = 12/498 (2%)

Query: 95  VEIRSLRAPYPLIQTIVLRNVRHIRQSNNSVILVLENSVHGLFPVPLGVQIVQLTAAGNF 154
           ++IRSLR PYPLIQTIVLRNVRH+ QS+NSVIL L+NS+ GLFPVPLG QIVQLTA+GNF
Sbjct: 16  LQIRSLRQPYPLIQTIVLRNVRHLCQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNF 75

Query: 155 EEALSLCKLLPPEDSNLRAAKEGSIHIRYAHHLFDNCSYEEAMEHFLESQVDITYVLSLY 214
           EEALSLCKLLPPEDS+LRAAKEGSIHIRYAH+LF+N SYEEA+EHFLESQVDITYVLSLY
Sbjct: 76  EEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFENGSYEEAVEHFLESQVDITYVLSLY 135

Query: 215 PSIILPKTTIVHEPEKFMDIFEDALCLSRGSSTMSDDMEPSPASHISESDENAELESKKM 274
           PSIILPKTTIVHEPEK +DI  DA  LSR SS +SDDMEP P      +DENA LESKK 
Sbjct: 136 PSIILPKTTIVHEPEK-LDIDGDASYLSRVSSGVSDDMEPLP------TDENAALESKKT 188

Query: 275 SHNMLMALIKFLHKKRYSVIEKATAEGTEEVVLDAVGDNFASYNSSRHKKITKGRGSTSI 334
           +HNMLMALIK+L KKR + IEKATAEGTEEVVLDAVGDN+ASYN  R KK  KGRG+ S+
Sbjct: 189 NHNMLMALIKYLQKKRGNFIEKATAEGTEEVVLDAVGDNYASYN--RFKKANKGRGNISV 246

Query: 335 SSVAREMASVXXXXXXXXXXXXXXXXXAEDLLGDLNYCDLKICEEILKEGGYLVALVELY 394
            S AREMAS+                 A ++L  +NYCD+KICEEIL++G    AL+ELY
Sbjct: 247 GSGAREMASILDTALLQALLLTGQSSAALEILRGVNYCDMKICEEILRKGNLNAALLELY 306

Query: 395 KCNSMHREALELVHKLV---KDGQSEIAHKFKPETIIEYLKPLCETDPTXXXXXXXXXXX 451
           KC S+HR+ALEL+HKLV   +  QSEI  +FKPE I+EYLKPLCETDP            
Sbjct: 307 KCKSLHRQALELLHKLVDESRSSQSEITQRFKPEDIVEYLKPLCETDPILVLEFSMLVLE 366

Query: 452 XNPTQTIELFLSGNIPAHMVNSYLKQHAPNLQATYLELMLAMNEDAVSGNLQNEMVQVYL 511
             P+QTIELFLSGNIPA MVNSYLKQH+PN+QA YLELMLAMNE+A+SGNLQNEMV +YL
Sbjct: 367 SCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYL 426

Query: 512 SEVLDWQADLSSQGKWDEKVYSPKRNKLLSALESMSGYNPEALLKRLPSDALYEERAILL 571
           S+VLDW ADL++Q  WDEK ++P R KLLSALE +SGYNPEALLKRLP DALYEERAILL
Sbjct: 427 SDVLDWHADLNAQQNWDEKTHTPTRKKLLSALEGISGYNPEALLKRLPQDALYEERAILL 486

Query: 572 GKMNQHELTLSLYVHKIY 589
           GKMNQHEL LSLYVHK++
Sbjct: 487 GKMNQHELALSLYVHKLH 504


>Medtr8g072800.1 | vacuolar sorting protein 39 domain 1 protein | HC
           | chr8:30783915-30783359 | 20130731
          Length = 138

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 3/57 (5%)

Query: 379 EILKEGGYLVALVELYKCNSMHREALELVHKLV---KDGQSEIAHKFKPETIIEYLK 432
           +IL++G    AL+ELYKC S+HR+ALEL+HKLV   +  QSEI  +FKPE I+EYLK
Sbjct: 34  KILRKGNLNAALLELYKCKSLHRQALELLHKLVDESRSSQSEITQRFKPEDIVEYLK 90