Miyakogusa Predicted Gene

Lj0g3v0259359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259359.1 Non Characterized Hit- tr|J3L6U8|J3L6U8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB01G4,86,2e-16,
,CUFF.17088.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g075050.1 | nucleic acid-binding, OB-fold-like protein | H...   392   e-109
Medtr3g075050.2 | nucleic acid-binding, OB-fold-like protein | H...   391   e-109

>Medtr3g075050.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr3:34079462-34070652 | 20130731
          Length = 668

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/263 (76%), Positives = 224/263 (85%), Gaps = 5/263 (1%)

Query: 1   MQVLQLQTSYLFTFPKP-PINPSSS-HFHRPLLLRNRPLSGLVAKAFSSDEFPVDEDTFP 58
           MQV     SYLFTFPKP  + PS   H H P LL  +P    VAK+F+SDEFPVDE TF 
Sbjct: 1   MQVFP--NSYLFTFPKPLNLKPSPLFHGHPPPLLHRKPPLTTVAKSFTSDEFPVDE-TFL 57

Query: 59  QNFTPPTQEAEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAFQ 118
           Q F P T+E+EDEARRRNWIERGWAPWEEILTPEA FAR SLNEGEEVPL SPE+IEAF+
Sbjct: 58  QTFGPKTKESEDEARRRNWIERGWAPWEEILTPEAKFARTSLNEGEEVPLSSPESIEAFR 117

Query: 119 MLNPRYRKQKRLEMGLTEEEYNQKQFEIKGEIPDPLETTWAGPLVVRLVPPRDWPPQGWE 178
           MLNPRYRK+K  EMG+TEEEY  KQFEIK ++P+ LET WAGPLVV+LVPPRDWPP+GWE
Sbjct: 118 MLNPRYRKKKIEEMGVTEEEYLAKQFEIKEDVPEELETKWAGPLVVKLVPPRDWPPRGWE 177

Query: 179 VDREELAYIREAHKMQAKRVSVEEIENGVRTETDDVCLDRYKVFLKQYKEWVEANKDRLE 238
           VDREELA+IREAHKM+AKRV +E+IENGVRTETDDVCLDRYKVFLKQY EW+EANKD LE
Sbjct: 178 VDREELAFIREAHKMEAKRVRLEDIENGVRTETDDVCLDRYKVFLKQYNEWLEANKDLLE 237

Query: 239 EESYEQDQDYHPGRRKRGKDYKE 261
           EESY+ DQDYHPGRRKRGKDYK+
Sbjct: 238 EESYKLDQDYHPGRRKRGKDYKD 260


>Medtr3g075050.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr3:34079462-34070652 | 20130731
          Length = 496

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/263 (76%), Positives = 224/263 (85%), Gaps = 5/263 (1%)

Query: 1   MQVLQLQTSYLFTFPKP-PINPSS-SHFHRPLLLRNRPLSGLVAKAFSSDEFPVDEDTFP 58
           MQV     SYLFTFPKP  + PS   H H P LL  +P    VAK+F+SDEFPVDE TF 
Sbjct: 1   MQVFP--NSYLFTFPKPLNLKPSPLFHGHPPPLLHRKPPLTTVAKSFTSDEFPVDE-TFL 57

Query: 59  QNFTPPTQEAEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAFQ 118
           Q F P T+E+EDEARRRNWIERGWAPWEEILTPEA FAR SLNEGEEVPL SPE+IEAF+
Sbjct: 58  QTFGPKTKESEDEARRRNWIERGWAPWEEILTPEAKFARTSLNEGEEVPLSSPESIEAFR 117

Query: 119 MLNPRYRKQKRLEMGLTEEEYNQKQFEIKGEIPDPLETTWAGPLVVRLVPPRDWPPQGWE 178
           MLNPRYRK+K  EMG+TEEEY  KQFEIK ++P+ LET WAGPLVV+LVPPRDWPP+GWE
Sbjct: 118 MLNPRYRKKKIEEMGVTEEEYLAKQFEIKEDVPEELETKWAGPLVVKLVPPRDWPPRGWE 177

Query: 179 VDREELAYIREAHKMQAKRVSVEEIENGVRTETDDVCLDRYKVFLKQYKEWVEANKDRLE 238
           VDREELA+IREAHKM+AKRV +E+IENGVRTETDDVCLDRYKVFLKQY EW+EANKD LE
Sbjct: 178 VDREELAFIREAHKMEAKRVRLEDIENGVRTETDDVCLDRYKVFLKQYNEWLEANKDLLE 237

Query: 239 EESYEQDQDYHPGRRKRGKDYKE 261
           EESY+ DQDYHPGRRKRGKDYK+
Sbjct: 238 EESYKLDQDYHPGRRKRGKDYKD 260