Miyakogusa Predicted Gene

Lj0g3v0259149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259149.1 Non Characterized Hit- tr|H9G413|H9G413_ANOCA
Uncharacterized protein (Fragment) OS=Anolis
carolinen,31.86,4e-19,SUBFAMILY NOT NAMED,NULL; SLD5 PROTEIN,GINS
complex, subunit Sld5; Sld5,GINS complex,CUFF.17063.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g044210.2 | DNA replication complex GINS SLD5-like protein...   382   e-106
Medtr2g044210.1 | DNA replication complex GINS SLD5-like protein...   330   9e-91

>Medtr2g044210.2 | DNA replication complex GINS SLD5-like protein |
           HC | chr2:19237625-19234071 | 20130731
          Length = 227

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/227 (83%), Positives = 204/227 (89%)

Query: 1   MDSNSVEGGPTVLTDDYDALISTTDFELLKRAWRSEKAAPEILRFESDLINRVREQIQLM 60
           M S S EG  + L DDYDALISTTD ELLKRAWR+EKAAPEILRFESDLINRV+ QI+LM
Sbjct: 1   MGSRSAEGEQSSLADDYDALISTTDVELLKRAWRNEKAAPEILRFESDLINRVKGQIELM 60

Query: 61  EDTVEEKGAAGADPHSLSLYQMDIDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLS 120
           E+TVEEK + G+DP S+SLYQMD+DRTLFLLRSYLRIRI KIEKYMFHI+KT ELWNRLS
Sbjct: 61  EETVEEKLSVGSDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTQELWNRLS 120

Query: 121 TEEKNFTRRCTDDLKQHLEESVLSKLPENYQSVQKQSVISEEDDMVPEPQQDTFVLCRSK 180
            +EK FT RCTDDLK+HLE SVLSKLPENYQS ++QSVISEEDDMVPEP+ DTFVLCRSK
Sbjct: 121 RDEKLFTERCTDDLKEHLESSVLSKLPENYQSYERQSVISEEDDMVPEPRLDTFVLCRSK 180

Query: 181 EYLTGIQLEDGPVDDRSKLFEMEAGVLYFICYKSIKALVESGKIDLL 227
           EYLTGIQLEDGPVDDRSKLFEME  VLYFICYKSIK LVESGKIDLL
Sbjct: 181 EYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL 227


>Medtr2g044210.1 | DNA replication complex GINS SLD5-like protein |
           HC | chr2:19237324-19233703 | 20130731
          Length = 262

 Score =  330 bits (845), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 164/216 (75%), Positives = 183/216 (84%), Gaps = 3/216 (1%)

Query: 1   MDSNSVEGGPTVLTDDYDALISTTDFELLKRAWRSEKAAPEILRFESDLINRVREQIQLM 60
           M S S EG  + L DDYDALISTTD ELLKRAWR+EKAAPEILRFESDLINRV+ QI+LM
Sbjct: 1   MGSRSAEGEQSSLADDYDALISTTDVELLKRAWRNEKAAPEILRFESDLINRVKGQIELM 60

Query: 61  EDTVEEKGAAGADPHSLSLYQMDIDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLS 120
           E+TVEEK + G+DP S+SLYQMD+DRTLFLLRSYLRIRI KIEKYMFHI+KT ELWNRLS
Sbjct: 61  EETVEEKLSVGSDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTQELWNRLS 120

Query: 121 TEEKNFTRRCTDDLKQHLEESVLSKLPENYQSVQKQSVISEEDDMVPEPQQDTFVLCRSK 180
            +EK FT RCTDDLK+HLE SVLSKLPENYQS ++QSVISEEDDMVPEP+ DTFVLCRSK
Sbjct: 121 RDEKLFTERCTDDLKEHLESSVLSKLPENYQSYERQSVISEEDDMVPEPRLDTFVLCRSK 180

Query: 181 EYLTGIQLEDGPVDDRSKLFEMEAGVLYFICYKSIK 216
           EYLTGIQLEDGPVDDR   F     +  F C+  ++
Sbjct: 181 EYLTGIQLEDGPVDDRQLSF---PRMNLFCCFLKVR 213