Miyakogusa Predicted Gene
- Lj0g3v0258629.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0258629.2 tr|F2DEQ1|F2DEQ1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,85.71,3e-17,SUBFAMILY NOT
NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT
(EIF-3),NULL; eIF3_p135,CUFF.17021.2
(147 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g027685.1 | eukaryotic translation initiation factor 3 sub... 189 1e-48
Medtr4g009960.1 | eukaryotic translation initiation factor 3 sub... 187 3e-48
Medtr4g009960.2 | eukaryotic translation initiation factor 3 sub... 187 4e-48
Medtr4g009960.3 | eukaryotic translation initiation factor 3 sub... 187 4e-48
Medtr4g009960.4 | eukaryotic translation initiation factor 3 sub... 187 4e-48
Medtr3g027610.1 | eukaryotic translation initiation factor 3 sub... 77 5e-15
Medtr0321s0030.1 | translation initiation factor, putative | HC ... 69 2e-12
>Medtr8g027685.1 | eukaryotic translation initiation factor 3
subunit | HC | chr8:9981153-9966029 | 20130731
Length = 1827
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 118/149 (79%), Gaps = 5/149 (3%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
++++ KYY+D A+PKLVADFGSLELSPVDGRTLTDFMHTRGL+M SLG VV+L++KL HV
Sbjct: 669 IDLSQKYYMDVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHV 728
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSC--Y 118
QSLCIHEM+ RA+KHIL+AV+++V + +MASSIA LN+LLG P + +D SC +
Sbjct: 729 QSLCIHEMIVRAFKHILRAVISSVVDKENMASSIAGALNLLLGVPENKESD---KSCDVH 785
Query: 119 ELKWKWVEMFLLKRFGWQWKHESGQDLRK 147
L WKW+E+FL KRF W + +D+RK
Sbjct: 786 PLVWKWLELFLKKRFDWDLSRLNYKDVRK 814
>Medtr4g009960.1 | eukaryotic translation initiation factor 3
subunit | HC | chr4:2156354-2144712 | 20130731
Length = 1638
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ MAHK+Y + ALPKLV DFGSLELSPVDGRTLTDFMH RGL+M SLG VV+L++ LPH+
Sbjct: 672 INMAHKFYDEVALPKLVTDFGSLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHI 731
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEM+ RA+KH+ +AV+A+VDN +D+ S IA LN LLG E D + + L
Sbjct: 732 QSLCIHEMITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHL 791
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
K W+ MFL KRFGW K E Q LRK
Sbjct: 792 KIHWLRMFLSKRFGWTLKDEF-QHLRK 817
>Medtr4g009960.2 | eukaryotic translation initiation factor 3
subunit | HC | chr4:2156235-2144712 | 20130731
Length = 1158
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ MAHK+Y + ALPKLV DFGSLELSPVDGRTLTDFMH RGL+M SLG VV+L++ LPH+
Sbjct: 672 INMAHKFYDEVALPKLVTDFGSLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHI 731
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEM+ RA+KH+ +AV+A+VDN +D+ S IA LN LLG E D + + L
Sbjct: 732 QSLCIHEMITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHL 791
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
K W+ MFL KRFGW K E Q LRK
Sbjct: 792 KIHWLRMFLSKRFGWTLKDEF-QHLRK 817
>Medtr4g009960.3 | eukaryotic translation initiation factor 3
subunit | HC | chr4:2156546-2144712 | 20130731
Length = 1158
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ MAHK+Y + ALPKLV DFGSLELSPVDGRTLTDFMH RGL+M SLG VV+L++ LPH+
Sbjct: 672 INMAHKFYDEVALPKLVTDFGSLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHI 731
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEM+ RA+KH+ +AV+A+VDN +D+ S IA LN LLG E D + + L
Sbjct: 732 QSLCIHEMITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHL 791
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
K W+ MFL KRFGW K E Q LRK
Sbjct: 792 KIHWLRMFLSKRFGWTLKDEF-QHLRK 817
>Medtr4g009960.4 | eukaryotic translation initiation factor 3
subunit | HC | chr4:2156235-2144712 | 20130731
Length = 1120
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ MAHK+Y + ALPKLV DFGSLELSPVDGRTLTDFMH RGL+M SLG VV+L++ LPH+
Sbjct: 672 INMAHKFYDEVALPKLVTDFGSLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHI 731
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEM+ RA+KH+ +AV+A+VDN +D+ S IA LN LLG E D + + L
Sbjct: 732 QSLCIHEMITRAFKHLFKAVIASVDNAADLPSVIALTLNFLLGGCQTEDTDQTLGDDHHL 791
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
K W+ MFL KRFGW K E Q LRK
Sbjct: 792 KIHWLRMFLSKRFGWTLKDEF-QHLRK 817
>Medtr3g027610.1 | eukaryotic translation initiation factor 3
subunit, putative | HC | chr3:8657899-8672705 | 20130731
Length = 1448
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 6 KYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCI 65
+Y D LPK V D +LE+SP+DG+TLT+ +H G+ + +G+V LPH+ LC
Sbjct: 803 QYLTDVVLPKFVQDLCTLEVSPMDGQTLTEALHAHGINVRYIGKVAGGTKHLPHLWDLCN 862
Query: 66 HEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGT 104
+E+V R+ KH+++ ++ ++ D++ +I+ LN L G
Sbjct: 863 NEIVVRSAKHVIKDLLRETED-HDLSPAISHFLNCLFGN 900
>Medtr0321s0030.1 | translation initiation factor, putative | HC |
scaffold0321:11817-16359 | 20130731
Length = 597
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 6 KYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCI 65
+Y D ALPK V D +LE+SP+DG+T T+ + G+ + +G+V LPH++ LC
Sbjct: 412 QYLTDVALPKFVQDLCTLEVSPMDGQTSTEALAAHGINVRYIGKVAGRTKHLPHLRDLCN 471
Query: 66 HEMVARAYKHILQ 78
+E+V R+ KH+++
Sbjct: 472 NEIVVRSAKHVIK 484