Miyakogusa Predicted Gene

Lj0g3v0258629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258629.1 Non Characterized Hit- tr|G8A2X7|G8A2X7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,42,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; EUKARYOTIC
TRANSLATION INITIATION FACTOR 3 SUBUNIT (EIF-3),NULL,CUFF.17021.1
         (433 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g027685.1 | eukaryotic translation initiation factor 3 sub...   298   6e-81
Medtr4g009960.1 | eukaryotic translation initiation factor 3 sub...   267   1e-71
Medtr4g009960.2 | eukaryotic translation initiation factor 3 sub...   266   3e-71
Medtr4g009960.3 | eukaryotic translation initiation factor 3 sub...   266   3e-71
Medtr4g009960.4 | eukaryotic translation initiation factor 3 sub...   265   5e-71

>Medtr8g027685.1 | eukaryotic translation initiation factor 3
           subunit | HC | chr8:9981153-9966029 | 20130731
          Length = 1827

 Score =  298 bits (764), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 171/436 (39%), Positives = 242/436 (55%), Gaps = 10/436 (2%)

Query: 1   MKAFTEHNKFGNLPYGFRANTWXXXXXXXXXXXXXXXLPMEDEIWXXXXXXXXXXXKHEK 60
           +KAF+E NKFGNLPYGFR+NTW               LP+EDE W           +++ 
Sbjct: 255 LKAFSERNKFGNLPYGFRSNTWLVPPIAAQSPSFFPPLPVEDENWGGNGGGLGRDGEYDL 314

Query: 61  RQWGRDFAILAAMPCQTAEERQLRDRKAFLLHSLFVDVSVSKAVSAIKHFIDNTQRSFSS 120
             W   F+ +A+MPC+TAEERQ RDRKAFLLHSLFVDV++ +A+ A+KH +++   SF+ 
Sbjct: 315 IPWANKFSFIASMPCKTAEERQGRDRKAFLLHSLFVDVAIFRAIRAVKHVLEDP--SFNC 372

Query: 121 TATPTS-YEEIAGDLTIKVTRDVSDASIKLDCKNDGNLVLELSEKELAQRNLLKGITADE 179
           +A     Y E  GDL+++V +D S AS K+D K DG     +++K+L +RNLLKGITADE
Sbjct: 373 SAVENDIYSERVGDLSVRVLKDGSVASCKIDSKIDGVEATGVNQKDLVERNLLKGITADE 432

Query: 180 SATVHDTPTLGAVIIRHCGYTALVKV-SAKTDWEGSPNSLEIDIEDQPEGGANALNVNSL 238
           +   HD  TLG V +R+CGY  +VKV     D   S      ++ DQPEGGANALN+NSL
Sbjct: 433 NTAAHDITTLGVVYVRYCGYVVVVKVEGGANDNANSSFHQNNEVFDQPEGGANALNINSL 492

Query: 239 RMLLHKSSTPQSS---NIIQRNQSTDIENXXXXXXXXXXXXXXXXXXXXTTTHSKSIRWE 295
           R  LH ++ P+++   N IQ  +S ++                       ++    +RWE
Sbjct: 493 RFRLHSTALPENNKQMNEIQMFESEELGGTDAFVEKLIKKSLAKLEEEELSS-DYFVRWE 551

Query: 296 LGACWVQHLQNQ-ATGXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXIDSRNSKVEQGK 354
           LGACWVQHLQ+Q +T                V                 DS N+      
Sbjct: 552 LGACWVQHLQDQNSTEKDKKPSLEKANNEMKVEGLGKPLKALKNNKKKSDSTNTNCASEH 611

Query: 355 DISTCNGIDINKPDATQQELERQGEEKETLWKTLLPDAAYTRLKESKTDLHLKSPDELME 414
             S   G + +   +++ + E    + E + K +L +AA+TRLKES T LH KS  +L++
Sbjct: 612 SKSNLEG-ENDALSSSESQHETAAVDNELVLKRMLSEAAFTRLKESGTGLHCKSMQDLID 670

Query: 415 MAHKYYIDTALPKLVS 430
           ++ KYY+D A+PKLV+
Sbjct: 671 LSQKYYMDVAIPKLVA 686


>Medtr4g009960.1 | eukaryotic translation initiation factor 3
           subunit | HC | chr4:2156354-2144712 | 20130731
          Length = 1638

 Score =  267 bits (683), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 229/449 (51%), Gaps = 60/449 (13%)

Query: 1   MKAFTEHNKFGNLPYGFRANTWXXXXXXXXXXXXXXXLPMEDEIWXXXXXXXXXXXKHEK 60
           MKAF E NKFGNLPYG R+NTW               LP EDE W           ++E+
Sbjct: 282 MKAFAERNKFGNLPYGLRSNTWLVAPSVGESLSNFPPLPAEDENWGGNGGGQGRNGEYER 341

Query: 61  RQWGRDFAILAAMPCQTAEERQLRDRKAFLLHSLFVDVSVSKAVSAIKHFIDNTQRSFSS 120
           R W  DF ILA++P +T EER +RDRKAFLLH+ FVD S+ KAV+AI+  ++ ++ S +S
Sbjct: 342 RPWATDFEILASLPSKTEEERVIRDRKAFLLHNQFVDTSIFKAVAAIQDVME-SKSSMNS 400

Query: 121 TATPTSYEEIAGDLTIKVTRDVSDASIKLDCKNDGNLVLELSEKELAQRNLLKGITADES 180
           +     +++  GDL+I V R         + K D  L     + +  Q+NL+KG++ADES
Sbjct: 401 SPGSVMHQDQVGDLSIVVERGG-------NGKFDSTLNESSKQSDDVQKNLIKGLSADES 453

Query: 181 ATVHDTPTLGAVIIRHCGYTALVKVSAKTDWEGSPNSLEIDIEDQPEGGANALNVNSLRM 240
            TV+DT +L  V++ HCGYTA VK   K +    P   +I+I+DQPEGGANALN+NSLR 
Sbjct: 454 VTVNDTSSLAVVVVHHCGYTATVKAIGKANTR-KPKVQDIEIDDQPEGGANALNINSLRA 512

Query: 241 LLHKSSTPQSSNIIQRNQSTDIENXXXXXXXXXXXXXXXXXXXXTTTHSKSIRWELGACW 300
           LLHKS    S   +    + D  +                     +   +SIRWELG+ W
Sbjct: 513 LLHKSGVDSSEGTLTSLSNFDDLDASKYLVRKVVEESIEKIKEEPSVSKRSIRWELGSSW 572

Query: 301 VQHLQNQATGXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXIDSRNSKVEQGKDI-STC 359
           +QHLQ Q                                    D  ++  + G D+    
Sbjct: 573 MQHLQKQENST--------------------------------DGSSNNNKDGSDVEPAV 600

Query: 360 NGI---------------DINKPDATQQEL-ERQGEEKETL--WKTLLPDAAYTRLKESK 401
            G+               D+N  D+ +Q   E   +E  +L   +TLL   A+ RLKES 
Sbjct: 601 KGLGKQFKLLKKREKKPSDLNGADSVEQNNDEPNNDEPSSLNELETLLSPEAFLRLKESG 660

Query: 402 TDLHLKSPDELMEMAHKYYIDTALPKLVS 430
           + LHLKS DEL+ MAHK+Y + ALPKLV+
Sbjct: 661 SGLHLKSVDELINMAHKFYDEVALPKLVT 689


>Medtr4g009960.2 | eukaryotic translation initiation factor 3
           subunit | HC | chr4:2156235-2144712 | 20130731
          Length = 1158

 Score =  266 bits (679), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 229/449 (51%), Gaps = 60/449 (13%)

Query: 1   MKAFTEHNKFGNLPYGFRANTWXXXXXXXXXXXXXXXLPMEDEIWXXXXXXXXXXXKHEK 60
           MKAF E NKFGNLPYG R+NTW               LP EDE W           ++E+
Sbjct: 282 MKAFAERNKFGNLPYGLRSNTWLVAPSVGESLSNFPPLPAEDENWGGNGGGQGRNGEYER 341

Query: 61  RQWGRDFAILAAMPCQTAEERQLRDRKAFLLHSLFVDVSVSKAVSAIKHFIDNTQRSFSS 120
           R W  DF ILA++P +T EER +RDRKAFLLH+ FVD S+ KAV+AI+  ++ ++ S +S
Sbjct: 342 RPWATDFEILASLPSKTEEERVIRDRKAFLLHNQFVDTSIFKAVAAIQDVME-SKSSMNS 400

Query: 121 TATPTSYEEIAGDLTIKVTRDVSDASIKLDCKNDGNLVLELSEKELAQRNLLKGITADES 180
           +     +++  GDL+I V R         + K D  L     + +  Q+NL+KG++ADES
Sbjct: 401 SPGSVMHQDQVGDLSIVVERGG-------NGKFDSTLNESSKQSDDVQKNLIKGLSADES 453

Query: 181 ATVHDTPTLGAVIIRHCGYTALVKVSAKTDWEGSPNSLEIDIEDQPEGGANALNVNSLRM 240
            TV+DT +L  V++ HCGYTA VK   K +    P   +I+I+DQPEGGANALN+NSLR 
Sbjct: 454 VTVNDTSSLAVVVVHHCGYTATVKAIGKANTR-KPKVQDIEIDDQPEGGANALNINSLRA 512

Query: 241 LLHKSSTPQSSNIIQRNQSTDIENXXXXXXXXXXXXXXXXXXXXTTTHSKSIRWELGACW 300
           LLHKS    S   +    + D  +                     +   +SIRWELG+ W
Sbjct: 513 LLHKSGVDSSEGTLTSLSNFDDLDASKYLVRKVVEESIEKIKEEPSVSKRSIRWELGSSW 572

Query: 301 VQHLQNQATGXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXIDSRNSKVEQGKDIS-TC 359
           +QHLQ Q                                    D  ++  + G D+    
Sbjct: 573 MQHLQKQENST--------------------------------DGSSNNNKDGSDVEPAV 600

Query: 360 NGI---------------DINKPDATQQEL-ERQGEEKETL--WKTLLPDAAYTRLKESK 401
            G+               D+N  D+ +Q   E   +E  +L   +TLL   A+ RLKES 
Sbjct: 601 KGLGKQFKLLKKREKKPSDLNGADSVEQNNDEPNNDEPSSLNELETLLSPEAFLRLKESG 660

Query: 402 TDLHLKSPDELMEMAHKYYIDTALPKLVS 430
           + LHLKS DEL+ MAHK+Y + ALPKLV+
Sbjct: 661 SGLHLKSVDELINMAHKFYDEVALPKLVT 689


>Medtr4g009960.3 | eukaryotic translation initiation factor 3
           subunit | HC | chr4:2156546-2144712 | 20130731
          Length = 1158

 Score =  266 bits (679), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 229/449 (51%), Gaps = 60/449 (13%)

Query: 1   MKAFTEHNKFGNLPYGFRANTWXXXXXXXXXXXXXXXLPMEDEIWXXXXXXXXXXXKHEK 60
           MKAF E NKFGNLPYG R+NTW               LP EDE W           ++E+
Sbjct: 282 MKAFAERNKFGNLPYGLRSNTWLVAPSVGESLSNFPPLPAEDENWGGNGGGQGRNGEYER 341

Query: 61  RQWGRDFAILAAMPCQTAEERQLRDRKAFLLHSLFVDVSVSKAVSAIKHFIDNTQRSFSS 120
           R W  DF ILA++P +T EER +RDRKAFLLH+ FVD S+ KAV+AI+  ++ ++ S +S
Sbjct: 342 RPWATDFEILASLPSKTEEERVIRDRKAFLLHNQFVDTSIFKAVAAIQDVME-SKSSMNS 400

Query: 121 TATPTSYEEIAGDLTIKVTRDVSDASIKLDCKNDGNLVLELSEKELAQRNLLKGITADES 180
           +     +++  GDL+I V R         + K D  L     + +  Q+NL+KG++ADES
Sbjct: 401 SPGSVMHQDQVGDLSIVVERGG-------NGKFDSTLNESSKQSDDVQKNLIKGLSADES 453

Query: 181 ATVHDTPTLGAVIIRHCGYTALVKVSAKTDWEGSPNSLEIDIEDQPEGGANALNVNSLRM 240
            TV+DT +L  V++ HCGYTA VK   K +    P   +I+I+DQPEGGANALN+NSLR 
Sbjct: 454 VTVNDTSSLAVVVVHHCGYTATVKAIGKANTR-KPKVQDIEIDDQPEGGANALNINSLRA 512

Query: 241 LLHKSSTPQSSNIIQRNQSTDIENXXXXXXXXXXXXXXXXXXXXTTTHSKSIRWELGACW 300
           LLHKS    S   +    + D  +                     +   +SIRWELG+ W
Sbjct: 513 LLHKSGVDSSEGTLTSLSNFDDLDASKYLVRKVVEESIEKIKEEPSVSKRSIRWELGSSW 572

Query: 301 VQHLQNQATGXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXIDSRNSKVEQGKDIS-TC 359
           +QHLQ Q                                    D  ++  + G D+    
Sbjct: 573 MQHLQKQENST--------------------------------DGSSNNNKDGSDVEPAV 600

Query: 360 NGI---------------DINKPDATQQEL-ERQGEEKETL--WKTLLPDAAYTRLKESK 401
            G+               D+N  D+ +Q   E   +E  +L   +TLL   A+ RLKES 
Sbjct: 601 KGLGKQFKLLKKREKKPSDLNGADSVEQNNDEPNNDEPSSLNELETLLSPEAFLRLKESG 660

Query: 402 TDLHLKSPDELMEMAHKYYIDTALPKLVS 430
           + LHLKS DEL+ MAHK+Y + ALPKLV+
Sbjct: 661 SGLHLKSVDELINMAHKFYDEVALPKLVT 689


>Medtr4g009960.4 | eukaryotic translation initiation factor 3
           subunit | HC | chr4:2156235-2144712 | 20130731
          Length = 1120

 Score =  265 bits (678), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 229/449 (51%), Gaps = 60/449 (13%)

Query: 1   MKAFTEHNKFGNLPYGFRANTWXXXXXXXXXXXXXXXLPMEDEIWXXXXXXXXXXXKHEK 60
           MKAF E NKFGNLPYG R+NTW               LP EDE W           ++E+
Sbjct: 282 MKAFAERNKFGNLPYGLRSNTWLVAPSVGESLSNFPPLPAEDENWGGNGGGQGRNGEYER 341

Query: 61  RQWGRDFAILAAMPCQTAEERQLRDRKAFLLHSLFVDVSVSKAVSAIKHFIDNTQRSFSS 120
           R W  DF ILA++P +T EER +RDRKAFLLH+ FVD S+ KAV+AI+  ++ ++ S +S
Sbjct: 342 RPWATDFEILASLPSKTEEERVIRDRKAFLLHNQFVDTSIFKAVAAIQDVME-SKSSMNS 400

Query: 121 TATPTSYEEIAGDLTIKVTRDVSDASIKLDCKNDGNLVLELSEKELAQRNLLKGITADES 180
           +     +++  GDL+I V R         + K D  L     + +  Q+NL+KG++ADES
Sbjct: 401 SPGSVMHQDQVGDLSIVVERGG-------NGKFDSTLNESSKQSDDVQKNLIKGLSADES 453

Query: 181 ATVHDTPTLGAVIIRHCGYTALVKVSAKTDWEGSPNSLEIDIEDQPEGGANALNVNSLRM 240
            TV+DT +L  V++ HCGYTA VK   K +    P   +I+I+DQPEGGANALN+NSLR 
Sbjct: 454 VTVNDTSSLAVVVVHHCGYTATVKAIGKANTR-KPKVQDIEIDDQPEGGANALNINSLRA 512

Query: 241 LLHKSSTPQSSNIIQRNQSTDIENXXXXXXXXXXXXXXXXXXXXTTTHSKSIRWELGACW 300
           LLHKS    S   +    + D  +                     +   +SIRWELG+ W
Sbjct: 513 LLHKSGVDSSEGTLTSLSNFDDLDASKYLVRKVVEESIEKIKEEPSVSKRSIRWELGSSW 572

Query: 301 VQHLQNQATGXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXIDSRNSKVEQGKDIS-TC 359
           +QHLQ Q                                    D  ++  + G D+    
Sbjct: 573 MQHLQKQENST--------------------------------DGSSNNNKDGSDVEPAV 600

Query: 360 NGI---------------DINKPDATQQEL-ERQGEEKETL--WKTLLPDAAYTRLKESK 401
            G+               D+N  D+ +Q   E   +E  +L   +TLL   A+ RLKES 
Sbjct: 601 KGLGKQFKLLKKREKKPSDLNGADSVEQNNDEPNNDEPSSLNELETLLSPEAFLRLKESG 660

Query: 402 TDLHLKSPDELMEMAHKYYIDTALPKLVS 430
           + LHLKS DEL+ MAHK+Y + ALPKLV+
Sbjct: 661 SGLHLKSVDELINMAHKFYDEVALPKLVT 689