Miyakogusa Predicted Gene

Lj0g3v0258549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258549.1 tr|G7LG16|G7LG16_MEDTR Short internode related
sequence OS=Medicago truncatula GN=MTR_8g039110 PE=4 ,59.77,0,FAMILY
NOT NAMED,NULL; DUF702,Protein of unknown function DUF702; seg,NULL;
put_zinc_LRP1: putative ,CUFF.17006.1
         (327 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g039110.1 | LRP1 carboxy-terminal domain protein | HC | ch...   300   1e-81
Medtr3g014660.1 | LRP1 carboxy-terminal domain protein | HC | ch...   288   5e-78
Medtr5g089750.1 | lateral root primordium (LRP)-like protein | H...   176   2e-44
Medtr0363s0040.1 | zinc finger, LRP1 type protein, putative | HC...   147   1e-35
Medtr8g076620.1 | zinc finger, LRP1 type protein | HC | chr8:324...   125   8e-29
Medtr5g021130.1 | transcription factor, putative | HC | chr5:810...   118   7e-27
Medtr4g071110.1 | zinc finger, LRP1 type protein | LC | chr4:267...    99   5e-21
Medtr3g112510.1 | transcription factor, putative | LC | chr3:527...    81   1e-15
Medtr1g023230.1 | zinc finger, LRP1 type protein | HC | chr1:741...    79   4e-15
Medtr0105s0070.1 | zinc finger, LRP1 type protein, putative | HC...    59   7e-09

>Medtr8g039110.1 | LRP1 carboxy-terminal domain protein | HC |
           chr8:14512197-14513962 | 20130731
          Length = 327

 Score =  300 bits (768), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 180/350 (51%), Positives = 204/350 (58%), Gaps = 46/350 (13%)

Query: 1   MSMLGFRDLVFIAPNPS-----QAQPFSADHHANXXXXXXXXXXXXXVGLGIFPLLTATP 55
           M+MLG RDLV IA  PS     Q Q  S+DH+ N             VGLGIFPLLT T 
Sbjct: 1   MNMLGLRDLVLIAQTPSSLHNQQNQTISSDHNPNLPLPSSSALS---VGLGIFPLLTTT- 56

Query: 56  CMXXXXXXXXXXSNTNDNVXXXXXXXXXXXXXPSFWNLKMCPPQ----LNSSDRKAAMII 111
                        + +                 +FWNLKMC PQ    +NSS ++     
Sbjct: 57  -------------HPHHQNPNNNNNNDNIHQDSNFWNLKMCQPQQVMMMNSSRKR----- 98

Query: 112 NVEEENGGVYGS----------DYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRS 161
            VEEE+  V             ++RVCQDCGNRAKKDCSYKRCRTCCKGRGFDC+THV+S
Sbjct: 99  -VEEEDDDVRNKNLMMGCEENGEFRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKS 157

Query: 162 TWIPLSHRRERHAVXXXXXXXXXXXXXXXXXXK-RPRSSQXXXXXXXXXXXXXXXXMSRN 220
           TWIP S RR+R  V                  K    SSQ                 +R+
Sbjct: 158 TWIPASMRRDRSMVVAEGGDSDGGASSGTKRQKILMTSSQNNVAANSHSSSSNAATRTRS 217

Query: 221 LSLD-TASCHQDAGFKQCLPGNIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKGF 279
           LSLD T+SCHQD GFKQ LP  +RAPA FKC RVS IGNGEDE AY+ATV ISGHVFKGF
Sbjct: 218 LSLDITSSCHQDPGFKQTLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGF 277

Query: 280 LYDQGVSGRNE-MPCVSELQLGNNGSGKSNREC-ASPIGVPTSVFPASAC 327
           LYDQGV  +NE MPCVSELQLG+NGSGKSNREC +S I VPTS +PASAC
Sbjct: 278 LYDQGVDDKNETMPCVSELQLGSNGSGKSNRECSSSAIEVPTSAYPASAC 327


>Medtr3g014660.1 | LRP1 carboxy-terminal domain protein | HC |
           chr3:4203654-4198130 | 20130731
          Length = 329

 Score =  288 bits (737), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 169/349 (48%), Positives = 201/349 (57%), Gaps = 44/349 (12%)

Query: 1   MSMLGFRDLVFIAPNPSQ---------------AQPFSADHHANXXXXXXXXXXXXXVGL 45
           MSMLG RDLV IAP+PS                 QP S DH++N             VG 
Sbjct: 1   MSMLGLRDLVLIAPSPSSLQHHHQQNQNQNQNQNQPISHDHNSNHSLPSSASLS---VGF 57

Query: 46  GIFPLLTATPCMXXXXXXXXXXSNTNDNVXXXXXXXXXXXXXPSFWNLKMCPPQLN---- 101
           GIFPLLTATPCM           + N+ V              +FWNL+MCP  +N    
Sbjct: 58  GIFPLLTATPCMPQQ-------QSQNNEVQENPSNNN------NFWNLRMCPEVVNLPKK 104

Query: 102 ---SSDRKAAMIINVEEENGGVYGSDYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTH 158
              + +     I  +E E  GVYGS+YRVCQDCGNRAKKDC ++RCRTCCKGRG+DC+TH
Sbjct: 105 GVITEEENHGKIAMMESEENGVYGSEYRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCSTH 164

Query: 159 VRSTWIPLSHRRERHAVXXXXXXXXXXXXXXXXXXKRPRSSQXXXXXXXXXXXXXXXXMS 218
           ++STWIP + RRER                     KR +                    +
Sbjct: 165 LKSTWIPSTRRREREV----EMFAGGGDGEGCSGVKRQKGLLGSSQNAAATSHSSNSNGT 220

Query: 219 RNLSLDTASCHQDAGFKQCLPGNIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKG 278
              S  T+SCHQDAGFK+ LPG++ APA F+C RV+ IGNGEDEFAY+ATV ISGHVFKG
Sbjct: 221 TPKSFATSSCHQDAGFKEGLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKG 280

Query: 279 FLYDQGVSGRNEMPCVSELQLGNNGSGKSNRECASPIGVP-TSVFPASA 326
           FLYD GV G+N MPCVSELQLGNN SGK N EC+S IGVP  + +PASA
Sbjct: 281 FLYDHGVDGKNPMPCVSELQLGNNCSGK-NGECSSAIGVPNNNAYPASA 328


>Medtr5g089750.1 | lateral root primordium (LRP)-like protein | HC |
           chr5:39020566-39017917 | 20130731
          Length = 467

 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 132/264 (50%), Gaps = 16/264 (6%)

Query: 43  VGLGIFPLLTATPCMXXXXXXXXXXSNTNDNVXXXXXXXXXXXXXPSFWNLKMCPPQLNS 102
           +G+G+ PLLTA+PC+          +                   P    LK     L+ 
Sbjct: 162 LGVGVIPLLTASPCLENENMLNSRRNQQGIQFWHEQHHQQQQQQSPHSHYLKKQQGFLDH 221

Query: 103 SDRKAAMIINVEEENGGVYGSDYRV------CQDCGNRAKKDCSYKRCRTCCKGRGFDCN 156
            +     +++     GG+  S          CQDCGN+AKKDCS +RCRTCCK RGFDC 
Sbjct: 222 HNTSPTNLVH----GGGLTASGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCP 277

Query: 157 THVRSTWIPLSHRRER-HAVXXXXXXXXXXXXXXXXXXKRPRSSQXXXXXXXXXXXXXXX 215
           THV+STW+P + RRER  +                   K+PR                  
Sbjct: 278 THVKSTWVPAARRRERLSSTATTTVVAGGGSSGSTSGAKKPR-----LIASQTTSHTSTS 332

Query: 216 XMSRNLSLDTASCHQDAGFKQCLPGNIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHV 275
             +   S DT S HQDAGFK  +PG +RAPA FKC+RV+ + +G+DE+AY A V+I GHV
Sbjct: 333 NTTPPRSFDTTSSHQDAGFKDSMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHV 392

Query: 276 FKGFLYDQGVSGRNEMPCVSELQL 299
           FKGFLYD GV  R   P +SEL L
Sbjct: 393 FKGFLYDHGVENREVYPNLSELHL 416


>Medtr0363s0040.1 | zinc finger, LRP1 type protein, putative | HC |
           scaffold0363:17438-16319 | 20130731
          Length = 245

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 104/194 (53%), Gaps = 42/194 (21%)

Query: 1   MSMLGFRDLVFIAPNPS-----QAQPFSADHHANXXXXXXXXXXXXXVGLGIFPLLTATP 55
           M+MLG RDLV IA  PS     Q Q  S+DH+ N             VGLGIFPLLT T 
Sbjct: 1   MNMLGLRDLVLIAQTPSSLHNQQNQTISSDHNPNLPLPSSSALS---VGLGIFPLLTTT- 56

Query: 56  CMXXXXXXXXXXSNTNDNVXXXXXXXXXXXXXPSFWNLKMCPPQ----LNSSDRKAAMII 111
                        + +                 +FWNLKMC PQ    +NSS ++     
Sbjct: 57  -------------HPHHQNPNNNNNNDNIHQDSNFWNLKMCQPQQVMMMNSSRKR----- 98

Query: 112 NVEEENGGVYGS----------DYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRS 161
            VEEE+  V             ++RVCQDCGNRAKKDCSYKRCRTCCKGRGFDC+THV+S
Sbjct: 99  -VEEEDDDVRNKNLMMGCEENGEFRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKS 157

Query: 162 TWIPLSHRRERHAV 175
           TWIP S RR+R  V
Sbjct: 158 TWIPASMRRDRSMV 171


>Medtr8g076620.1 | zinc finger, LRP1 type protein | HC |
           chr8:32482156-32484876 | 20130731
          Length = 331

 Score =  125 bits (313), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 91/185 (49%), Gaps = 33/185 (17%)

Query: 101 NSSDRKAAMIINVEEENGGVYGSDYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVR 160
            SS R AA  + +   +     S    CQDCGN+AKKDC + RCRTCCK RGF C THV+
Sbjct: 98  QSSSRSAAFTMAMRSSSSAEGIS----CQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVK 153

Query: 161 STWIPLSHRRERHAVXXXXXXXXXXXXXXXXXXKRPRSSQXXXXXXXXXXXXXXXXMSRN 220
           STW+P S RRER                     KRPR                      N
Sbjct: 154 STWVPASRRRERQ-------QQLSSSPLQRDISKRPRDGS-------------------N 187

Query: 221 LSLDTASCHQDAGFKQC-LPGNIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKGF 279
             + T + H   G ++   P  + +PAEF+C+RVS I + +D +AY   V I GH+FKG 
Sbjct: 188 ALVSTRNFH--TGLEEANFPAVVSSPAEFRCVRVSSIDDADDRYAYQTAVNIGGHLFKGI 245

Query: 280 LYDQG 284
           LYD G
Sbjct: 246 LYDFG 250


>Medtr5g021130.1 | transcription factor, putative | HC |
           chr5:8100971-8103215 | 20130731
          Length = 323

 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 122 GSDYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRSTWIPLSHRRERHAVXXXXXX 181
           GS    CQDCGN+AKKDC + RCRTCCK RGFDC THV+STW+P + RRER         
Sbjct: 94  GSGSISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQL 153

Query: 182 XXXXXXXXXXXXKRPRSSQXXXXXXXXXXXXXXXXMSRNLSLDTASCHQDAGFKQCLPGN 241
                         P++                   +R+L+L +A    +  F    P  
Sbjct: 154 SAPKSFQQHGDIV-PQNRHRDLNNNNSSLACTRLPTNRSLTLPSAGLLDEMNF----PAV 208

Query: 242 IRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKGFLYDQG 284
           + +PAEF+C+RVS +   E+E+AY   V I GHVF+G LYD G
Sbjct: 209 VNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYG 251


>Medtr4g071110.1 | zinc finger, LRP1 type protein | LC |
           chr4:26795870-26794245 | 20130731
          Length = 264

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 72/157 (45%), Gaps = 36/157 (22%)

Query: 128 CQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRSTWIPLSHRRERHAVXXXXXXXXXXXX 187
           CQDCGN+AKKDC+Y RCR+CCK +GF+C+TH+RSTWIP   RR R               
Sbjct: 17  CQDCGNQAKKDCAYSRCRSCCKNKGFNCHTHIRSTWIPADRRRHR--------------- 61

Query: 188 XXXXXXKRPRSSQXXXXXXXXXXXXXXXXMSRNLSLDTASCHQDAGFKQCLPGNIRAPAE 247
                   P                      R+  ++T S   +  F    P    +   
Sbjct: 62  -----MDHPSDQHHLHEH------------KRHKQINTISSSDEFKF----PAVTSSMTT 100

Query: 248 FKCLRVSGIGNGEDEFAYMATVRISGHVFKGFLYDQG 284
             C++V  +    +E AY  +V I GHVF G LYDQG
Sbjct: 101 LTCVQVRSMDETVNETAYQTSVEIGGHVFSGILYDQG 137


>Medtr3g112510.1 | transcription factor, putative | LC |
           chr3:52767953-52766535 | 20130731
          Length = 294

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 38/45 (84%)

Query: 128 CQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRSTWIPLSHRRER 172
           CQDCGN+AKKDC + RCRTCCK RGF C THV+STW+P + RRER
Sbjct: 86  CQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 130


>Medtr1g023230.1 | zinc finger, LRP1 type protein | HC |
           chr1:7419015-7417436 | 20130731
          Length = 252

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 38/45 (84%)

Query: 128 CQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRSTWIPLSHRRER 172
           CQDCGN+AKKDC + RCRTCCK RGF C THV+STW+P + RRER
Sbjct: 122 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 166


>Medtr0105s0070.1 | zinc finger, LRP1 type protein, putative | HC |
           scaffold0105:24983-22116 | 20130731
          Length = 86

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 30/33 (90%)

Query: 130 DCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRST 162
           DCGN+AKKDC+Y RCR+CCK + F+C+TH++++
Sbjct: 44  DCGNQAKKDCAYSRCRSCCKNKDFNCHTHIKTS 76