Miyakogusa Predicted Gene

Lj0g3v0258489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258489.1 Non Characterized Hit- tr|K3Y203|K3Y203_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si008222,38.33,4e-17,RIX1,NULL,CUFF.17000.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g028030.1 | rRNA processing/ribosome biogenesis protein | ...   229   8e-61
Medtr3g075460.1 | rRNA processing/ribosome biogenesis protein | ...   226   8e-60

>Medtr8g028030.1 | rRNA processing/ribosome biogenesis protein | HC
           | chr8:10367089-10377430 | 20130731
          Length = 864

 Score =  229 bits (585), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 144/190 (75%), Gaps = 12/190 (6%)

Query: 1   MVAFDHFVDDMNDVELKPRLLDTLISDSL-------SNPSEISKVISLVKTHALLSESFT 53
           M  FD F  DM D+ LKPRLL+TLI D+L       SNPS++S V+SL+KTH+LLSE  T
Sbjct: 1   MATFDSF-RDMYDIALKPRLLNTLIRDNLPTVDHPFSNPSQLSNVVSLIKTHSLLSEDVT 59

Query: 54  ESMNPELVEHWKSAVTSWFQRTWTLLFS---DKYCWAGISLLGVTCQECSAHRFIDSYSM 110
           ESM+P+ ++ WKS+V SW  R   L+ S   DK  WAGISLLGVTC+ECS+ RF +SY++
Sbjct: 60  ESMDPKQIKAWKSSVASWVDRVLLLISSREPDKR-WAGISLLGVTCEECSSDRFQESYTV 118

Query: 111 WFHKLLTFLQAPADSHRVRVASCASISALFARLSGFPKLNKYGVSYAVKVIQPVLRMIQD 170
           WF KLLT LQ+P DSH VRVA+CASIS L ARLSGFPK  K G + AVKV+QPVL+M+ D
Sbjct: 119 WFQKLLTSLQSPEDSHFVRVATCASISDLLARLSGFPKFKKDGSASAVKVVQPVLKMLHD 178

Query: 171 ENSEAIWEAA 180
           +NSEA+WEAA
Sbjct: 179 DNSEAVWEAA 188


>Medtr3g075460.1 | rRNA processing/ribosome biogenesis protein | HC
           | chr3:34364829-34352574 | 20130731
          Length = 862

 Score =  226 bits (576), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 146/190 (76%), Gaps = 12/190 (6%)

Query: 1   MVAFDHFVDDMNDVELKPRLLDTLISDSL-------SNPSEISKVISLVKTHALLSESFT 53
           M AF+HF  DM DV LKPRLL+T+I + L       SNPSE+SKV+SL+KTH+LLS+S T
Sbjct: 1   MAAFEHF-KDMYDVALKPRLLNTIIREHLPSADHPFSNPSELSKVVSLIKTHSLLSDSVT 59

Query: 54  ESMNPELVEHWKSAVTSWFQRTWTLLFS---DKYCWAGISLLGVTCQECSAHRFIDSYSM 110
           ES++P+L++  KS+ TSW  R   L+ S   DK  WAGISLLGVTC+ECS+ RF +SY++
Sbjct: 60  ESLDPKLIKSLKSSFTSWVDRLLLLISSHEPDKR-WAGISLLGVTCEECSSDRFEESYTV 118

Query: 111 WFHKLLTFLQAPADSHRVRVASCASISALFARLSGFPKLNKYGVSYAVKVIQPVLRMIQD 170
           WF KLLT LQ+PA+SH VRVA+CASIS L  RLSGFPK  K G + AVKV+QPVL+M+ D
Sbjct: 119 WFQKLLTCLQSPAESHLVRVAACASISDLLTRLSGFPKFKKDGSASAVKVVQPVLKMLHD 178

Query: 171 ENSEAIWEAA 180
           +NS+A+WEA 
Sbjct: 179 DNSDAVWEAG 188