Miyakogusa Predicted Gene

Lj0g3v0258149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258149.1 tr|F2D440|F2D440_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,26.83,0.000000003,seg,NULL,CUFF.16973.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g038430.1 | DnaJ heat shock amine-terminal domain protein ...   229   1e-60

>Medtr1g038430.1 | DnaJ heat shock amine-terminal domain protein |
           HC | chr1:14130893-14127710 | 20130731
          Length = 459

 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 139/195 (71%), Gaps = 4/195 (2%)

Query: 1   MSAFQAIRSISNWLYWQSPGSSSHEKSMTRVVYQL-PEPNIGKLRDAAAKRKLRETKRTS 59
           MSA QAIRSISNWLYWQ P  +S  KSMT+V  +L P+PN+ KLRDAAAKRKL++T++T 
Sbjct: 267 MSAIQAIRSISNWLYWQ-PNRASDNKSMTKVAQKLLPDPNLSKLRDAAAKRKLKDTQKTK 325

Query: 60  HQTPLNSIHPEEYWAPSTFALXXXXXXXXXXXXDEKPSVTKAQKKTRERDHGTRENHNSP 119
           H+TP+NSIHPEEYW PST  L             EKP+  K +K+ +  D  T EN NSP
Sbjct: 326 HKTPINSIHPEEYWTPSTVVLPSSTSTTATPPI-EKPTFAKGKKQRKRSDVETYENENSP 384

Query: 120 FTWGFPVVTAMIAVATVRLHEV-ELTTELKQHVGGSLAVEIVNSSWLQCVLAAATWYMIG 178
             WG PVVT++  +A VRLHEV   T ELK+H GGSLA+EIVNSSWLQ +L AATWY+IG
Sbjct: 385 IRWGLPVVTSLFGMAAVRLHEVGSSTVELKEHWGGSLALEIVNSSWLQYILVAATWYVIG 444

Query: 179 LAVVELVALIGNRTR 193
              VE VA IGNR R
Sbjct: 445 RVAVEFVANIGNRNR 459