Miyakogusa Predicted Gene
- Lj0g3v0257769.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0257769.2 Non Characterized Hit- tr|I3S057|I3S057_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.55,0,seg,NULL;
NAC,Nascent polypeptide-associated complex NAC;
UBA,Ubiquitin-associated/translation elong,CUFF.16952.2
(220 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g092970.1 | nascent proteinassociated complex alpha chain ... 188 4e-48
Medtr3g092980.1 | nascent proteinassociated complex alpha chain ... 175 3e-44
Medtr3g092980.2 | nascent proteinassociated complex alpha chain ... 172 2e-43
Medtr7g088680.1 | nascent proteinassociated complex alpha chain ... 139 3e-33
Medtr3g093750.1 | hypothetical protein | HC | chr3:42832436-4283... 87 8e-18
Medtr3g093720.1 | UBA/TS-N domain protein | HC | chr3:42818981-4... 73 2e-13
>Medtr3g092970.1 | nascent proteinassociated complex alpha chain |
HC | chr3:42497928-42500253 | 20130731
Length = 227
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 124/228 (54%), Gaps = 9/228 (3%)
Query: 1 MSPGTVLDA---SSDDHQQLPSA--TDDKKKPQPQEYXX---XXXXXXXXXXXXXXXXXX 52
M+PG V+DA S+ QQ+PS T KKKPQP+E
Sbjct: 1 MAPGPVIDAPATESEVEQQIPSVDETTLKKKPQPEEDDAPIIEDVKDDDKDDEDDDEDDD 60
Query: 53 XXXXXXXXGAQGTTEGXXXXXXXXXXXXAMLKLGLKPVTGVSRVTIKRTKNILFFISKPD 112
A +G AMLKLGLKPVTGVSRVTIKRTKNILFFISKPD
Sbjct: 61 DEDDDDKEDALAGADGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNILFFISKPD 120
Query: 113 VFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMASXXXXXXXXXXXXXXXXXXXX 172
VFKSPNSETY+IFGEAKIED FRMPDM S
Sbjct: 121 VFKSPNSETYIIFGEAKIEDLSSQLQTQAAQQFRMPDMGS-VMAKQDQGASASGAIPEEE 179
Query: 173 XXXXXXXXXXPHDIDLVMTQAGVSRSKAVKALKTHNGDIVGAIMELTT 220
PHDIDLVMTQAGVS+SKAVKALKTHNGDIVGAIMELTT
Sbjct: 180 EEEIDETGVEPHDIDLVMTQAGVSKSKAVKALKTHNGDIVGAIMELTT 227
>Medtr3g092980.1 | nascent proteinassociated complex alpha chain |
HC | chr3:42500811-42503374 | 20130731
Length = 218
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 118/224 (52%), Gaps = 10/224 (4%)
Query: 1 MSPGTVL--DASSDDHQQLPSA--TDDKKKPQPQEYXXXXXXXXXXXXXXXXXXXXXXXX 56
MSPG ++ A QQLPS T K KP PQE
Sbjct: 1 MSPGPIIDAAADGAADQQLPSVDETTLKNKPLPQE----EDDAPIVEDDNDDDKDESEDE 56
Query: 57 XXXXGAQGTTEGXXXXXXXXXXXXAMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKS 116
QG TEG AMLKLGLKP+ GV+RVTIKRTKN++FFISKPDVFKS
Sbjct: 57 EDDESPQGGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVTIKRTKNVMFFISKPDVFKS 116
Query: 117 PNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMASXXXXXXXXXXXXXXXXXXXXXXXX 176
PNSETYVIFGEAKIED FRMPDM S
Sbjct: 117 PNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSIMAKQEQGAAADGAQPEEEEEVDE 176
Query: 177 XXXXXXPHDIDLVMTQAGVSRSKAVKALKTHNGDIVGAIMELTT 220
HDI+LVMTQAGVS++KAVKALKTHNGDIVGAIMELT
Sbjct: 177 TGVEA--HDIELVMTQAGVSKAKAVKALKTHNGDIVGAIMELTN 218
>Medtr3g092980.2 | nascent proteinassociated complex alpha chain |
HC | chr3:42501153-42503353 | 20130731
Length = 220
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 64 GTTEGXXXXXXXXXXXXAMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 123
G TEG AMLKLGLKP+ GV+RVTIKRTKN++FFISKPDVFKSPNSETYV
Sbjct: 66 GGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVTIKRTKNVMFFISKPDVFKSPNSETYV 125
Query: 124 IFGEAKIEDXXXXXXXXXXXXFRMPDMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 183
IFGEAKIED FRMPDM S
Sbjct: 126 IFGEAKIEDLSSQLQTQAAQQFRMPDMGSIMAKQEQGAAADGAQPEEEEEVDETGVEA-- 183
Query: 184 HDIDLVMTQAGVSRSKAVKALKTHNGDIVGAIMELTT 220
HDI+LVMTQAGVS++KAVKALKTHNGDIVGAIMELT
Sbjct: 184 HDIELVMTQAGVSKAKAVKALKTHNGDIVGAIMELTN 220
>Medtr7g088680.1 | nascent proteinassociated complex alpha chain |
HC | chr7:34572677-34570419 | 20130731
Length = 203
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Query: 81 AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 140
AMLKLG+K VTGVSRVTIK++KNILF ISKPDVFKSP S+TY+IFGEAKIED
Sbjct: 71 AMLKLGMKAVTGVSRVTIKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQ 130
Query: 141 XXXXFRMPDMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHDIDLVMTQAGVSRSKA 200
F+ P++ + P DI+LV+TQAGV RS+A
Sbjct: 131 AAEQFKAPNLTN-------AGAKPESSGIAPEDEDVDETGVDPKDIELVVTQAGVPRSRA 183
Query: 201 VKALKTHNGDIVGAIMELTT 220
VKALK NGDIV AIMELT
Sbjct: 184 VKALKAANGDIVAAIMELTN 203
>Medtr3g093750.1 | hypothetical protein | HC |
chr3:42832436-42836000 | 20130731
Length = 530
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 98 IKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMASXXXXX 157
IKRTKNI+FFISK DV KS NS+TY++F EAK ED + +
Sbjct: 419 IKRTKNIMFFISKLDVIKSSNSDTYIMFEEAKKED--------------LMNSHQLQTQA 464
Query: 158 XXXXXXXXXXXXXXXXXXXXXXXXXPHDIDLVMTQAGVSRSKAVKALKTHNGDIVGAIME 217
+I++VM QAGVSRSKAVKALKT+NGDIV A++E
Sbjct: 465 AQEQGAGADGAQPEEEEEVDETGMQAQNIEMVMIQAGVSRSKAVKALKTYNGDIVDAMLE 524
Query: 218 L 218
L
Sbjct: 525 L 525
>Medtr3g093720.1 | UBA/TS-N domain protein | HC |
chr3:42818981-42820040 | 20130731
Length = 295
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 185 DIDLVMTQAGVSRSKAVKALKTHNGDIVGAIMELT 219
DI+LVMTQAGVSRSKAVKALKTHNGDIVGAIMELT
Sbjct: 222 DIELVMTQAGVSRSKAVKALKTHNGDIVGAIMELT 256