Miyakogusa Predicted Gene

Lj0g3v0257719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257719.1 Non Characterized Hit- tr|H2M5X2|H2M5X2_ORYLA
Uncharacterized protein OS=Oryzias latipes GN=MBD4
PE=,37.32,5e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; 5-METHYLCYTOSINE
G/T MISMATCH-SPECIFIC DNA GLYCOSYLASE,NULL; HhH,CUFF.16947.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD fam...   171   3e-43
Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD fam...   169   1e-42
Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD fam...   169   1e-42
Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD fam...   169   1e-42
Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD fam...   125   2e-29
Medtr6g034730.1 | HhH-GPD base excision DNA repair family protei...    68   5e-12
Medtr6g033105.1 | hypothetical protein | LC | chr6:10427112-1042...    56   3e-08

>Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102615-107252 | 20130731
          Length = 280

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 105/152 (69%), Gaps = 7/152 (4%)

Query: 52  EAYKRITSDIKWVPPQS--DICLIQQEHFQDPWKVMAICILLNNTTDTDEVRLAISNLFS 109
           EAYKR T D  WVPP S  +  L+Q+ HF DPW+V+ IC+LLN T    + +  + N F 
Sbjct: 130 EAYKRKTLDNNWVPPPSGFEFPLLQEHHFHDPWRVIVICMLLNRTLGK-QTKQVLDNFFE 188

Query: 110 LCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTYLHGIGKYAAD 169
           LCP+A TC QV +++IEE I  + +  +++  LQ+FS EYL E WT+VT LHG+GKYAAD
Sbjct: 189 LCPDAETCMQVKREEIEEVIKTLGFQVKRSRSLQRFSREYLTETWTYVTELHGVGKYAAD 248

Query: 170 AYAIFCTGKWQRVTPAAGQNDHKLLDYWKFLH 201
           AYAIFCTGKW  V P    +D+KL +YW FLH
Sbjct: 249 AYAIFCTGKWDEVVP----DDYKLNEYWNFLH 276


>Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:33142-29197 | 20130731
          Length = 282

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 10/161 (6%)

Query: 52  EAYKRITSDIKWVPPQS-----DICLIQQEHFQDPWKVMAICILLNNTTDTDEVRLAISN 106
           EAYKR T D  WVPP+S     +  L+Q++HF DPW+V+ IC+LLN T    +    ++N
Sbjct: 127 EAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKG-QQAEKVLAN 185

Query: 107 LFSLCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTYLHGIGKY 166
            F LCPNA TC QV K +I+E I  +    +++  LQ+ S EYL   WT+VT LH +GKY
Sbjct: 186 FFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVTELHSVGKY 245

Query: 167 AADAYAIFCTGKWQRVTPAAGQNDHKLLDYWKFLHTIKHTL 207
           AADAYAIFCTGKW  V P    +DHKL  YW FLH+IK TL
Sbjct: 246 AADAYAIFCTGKWDEVVP----DDHKLNKYWNFLHSIKDTL 282


>Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 10/161 (6%)

Query: 52  EAYKRITSDIKWVPPQS-----DICLIQQEHFQDPWKVMAICILLNNTTDTDEVRLAISN 106
           EAYKR T D  WVPP+S     +  L+Q++HF DPW+V+ IC+LLN T    +    ++N
Sbjct: 127 EAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKG-QQAEKVLAN 185

Query: 107 LFSLCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTYLHGIGKY 166
            F LCPNA TC QV K +I+E I  +    +++  LQ+ S EYL   WT+VT LH +GKY
Sbjct: 186 FFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVTELHSVGKY 245

Query: 167 AADAYAIFCTGKWQRVTPAAGQNDHKLLDYWKFLHTIKHTL 207
           AADAYAIFCTGKW  V P    +DHKL  YW FLH+IK TL
Sbjct: 246 AADAYAIFCTGKWDEVVP----DDHKLNKYWNFLHSIKDTL 282


>Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 10/161 (6%)

Query: 52  EAYKRITSDIKWVPPQS-----DICLIQQEHFQDPWKVMAICILLNNTTDTDEVRLAISN 106
           EAYKR T D  WVPP+S     +  L+Q++HF DPW+V+ IC+LLN T    +    ++N
Sbjct: 127 EAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKG-QQAEKVLAN 185

Query: 107 LFSLCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTYLHGIGKY 166
            F LCPNA TC QV K +I+E I  +    +++  LQ+ S EYL   WT+VT LH +GKY
Sbjct: 186 FFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVTELHSVGKY 245

Query: 167 AADAYAIFCTGKWQRVTPAAGQNDHKLLDYWKFLHTIKHTL 207
           AADAYAIFCTGKW  V P    +DHKL  YW FLH+IK TL
Sbjct: 246 AADAYAIFCTGKWDEVVP----DDHKLNKYWNFLHSIKDTL 282


>Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102540-105043 | 20130731
          Length = 252

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 3/118 (2%)

Query: 52  EAYKRITSDIKWVPPQS--DICLIQQEHFQDPWKVMAICILLNNTTDTDEVRLAISNLFS 109
           EAYKR T D  WVPP S  +  L+Q+ HF DPW+V+ IC+LLN T    + +  + N F 
Sbjct: 133 EAYKRKTLDNNWVPPPSGFEFPLLQEHHFHDPWRVIVICMLLNRTLG-KQTKQVLDNFFE 191

Query: 110 LCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTYLHGIGKYA 167
           LCP+A TC QV +++IEE I  + +  +++  LQ+FS EYL E WT+VT LHG+GKY 
Sbjct: 192 LCPDAETCMQVKREEIEEVIKTLGFQVKRSRSLQRFSREYLTETWTYVTELHGVGKYV 249


>Medtr6g034730.1 | HhH-GPD base excision DNA repair family protein |
           LC | chr6:14200273-14200662 | 20130731
          Length = 96

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 100 VRLAISNLFSLCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTY 159
           V+  + N F LCP+  TC QV+ ++IEE I  +    +++  LQ  S EYL E WT+VT 
Sbjct: 3   VKQVLDNFFKLCPDVETCMQVTMEEIEEVIRTLGLQVKRSGSLQHLSREYLTETWTYVTE 62

Query: 160 LHGIG 164
           LHG+G
Sbjct: 63  LHGVG 67


>Medtr6g033105.1 | hypothetical protein | LC |
           chr6:10427112-10425913 | 20130731
          Length = 191

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 5/48 (10%)

Query: 52  EAYKRITSDIKWVPPQS-----DICLIQQEHFQDPWKVMAICILLNNT 94
           E YKR T D  WVPP+S     +  L+Q++HF DPW+V+ IC+LLN T
Sbjct: 125 EVYKRKTPDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRT 172