Miyakogusa Predicted Gene

Lj0g3v0257619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257619.1 Non Characterized Hit- tr|B9RGK0|B9RGK0_RICCO
WD-repeat protein, putative OS=Ricinus communis GN=RCO,34.71,6e-19,WD
REPEAT PROTEIN 26-RELATED,NULL; C-terminal to LisH motif.,CTLH,
C-terminal LisH motif; LISH,LisH ,CUFF.16948.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069345.1 | transducin/WD40 repeat protein | HC | chr1:299...   209   7e-55
Medtr5g090420.1 | transducin/WD40 repeat protein | HC | chr5:393...    91   7e-19
Medtr3g449990.1 | transducin/WD40 repeat protein | HC | chr3:171...    86   2e-17
Medtr3g449950.1 | transducin family protein/WD-40 repeat protein...    82   2e-16

>Medtr1g069345.1 | transducin/WD40 repeat protein | HC |
           chr1:29955415-29960832 | 20130731
          Length = 507

 Score =  209 bits (533), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 109/163 (66%), Positives = 129/163 (79%), Gaps = 9/163 (5%)

Query: 2   MESNHSEVLIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLESH 61
           ME+N SE L GSK L  KHEF+RII+Q LYSLGY+K+AS LE ESGV +KS EFQLLESH
Sbjct: 1   MENNSSETL-GSKGLINKHEFIRIILQSLYSLGYTKTASLLESESGVSYKSNEFQLLESH 59

Query: 62  VLNGNWDGCIGFLNSMRDIMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSALH 121
           VLNGNW+ C+ FLNS+ +I+GE+VESALFLV RQ +MEY+K GE  LALDVLRKRVSAL 
Sbjct: 60  VLNGNWEACVTFLNSITEILGESVESALFLVFRQTVMEYLKRGEDGLALDVLRKRVSALR 119

Query: 122 LDRYKVHSLANSMLSLKDTEIGGAVDGDAVRDLRRKLLTDLEK 164
           +DR+KVHSLANS+++L D  + G        DLR KLL DLEK
Sbjct: 120 VDRFKVHSLANSVVNLNDEVVEG--------DLRGKLLMDLEK 154


>Medtr5g090420.1 | transducin/WD40 repeat protein | HC |
           chr5:39373338-39377755 | 20130731
          Length = 572

 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 75/136 (55%)

Query: 1   MMESNHSEVLIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLES 60
           ++ S   + ++GSK + K+ EFVRII + LYSLGY KS + LE ESG+   S    L   
Sbjct: 45  LLPSEGDDQVVGSKGVIKRDEFVRIIAKALYSLGYRKSGARLEEESGIPLHSPGVNLFTQ 104

Query: 61  HVLNGNWDGCIGFLNSMRDIMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSAL 120
            VL+GNWD  +  L  +       V SA  L+L Q   E +  G+V  AL  LR+ ++ L
Sbjct: 105 QVLDGNWDESVATLRKIGLTDDTIVRSASCLILEQKFFELLNGGKVMEALKTLREEITPL 164

Query: 121 HLDRYKVHSLANSMLS 136
             D  ++  L++ ++S
Sbjct: 165 CRDSSRIRELSSCLVS 180


>Medtr3g449990.1 | transducin/WD40 repeat protein | HC |
           chr3:17129213-17120938 | 20130731
          Length = 581

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 72/130 (55%)

Query: 10  LIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLESHVLNGNWDG 69
           ++GSK + KK EFVRII + LYSLGY K+   LE ESG+   S    +    VL+G+W+ 
Sbjct: 54  VVGSKGIIKKGEFVRIITKALYSLGYKKTGENLEEESGIPLNSSVVNVFMQQVLDGDWEE 113

Query: 70  CIGFLNSMRDIMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSALHLDRYKVHS 129
            +  LN +       V +A FL+L Q   E +   +V  AL  LR  ++ L +D  ++  
Sbjct: 114 SVSTLNKIGLEDERIVRAASFLILEQKFFELLDGDKVMDALKTLRTEITELCVDSARIRE 173

Query: 130 LANSMLSLKD 139
           L++ +LS  D
Sbjct: 174 LSSCLLSPSD 183


>Medtr3g449950.1 | transducin family protein/WD-40 repeat protein |
           HC | chr3:17110234-17112881 | 20130731
          Length = 311

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 69/126 (54%)

Query: 10  LIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLESHVLNGNWDG 69
           ++G+K   K+ EFVR+I + +YSLGY KS   LE ESG+   S    L    VL+G+WD 
Sbjct: 47  VVGTKGSLKRREFVRMITKAMYSLGYKKSGEHLEEESGIPLNSSAVNLFMQQVLDGDWDE 106

Query: 70  CIGFLNSMRDIMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSALHLDRYKVHS 129
            +  L  +       V++A  L+L Q   E I   +V  AL+ LR +++ L +D  ++  
Sbjct: 107 SLATLKQIGLEDESIVKAASLLILEQKFFELIDGDKVIEALNTLRNQITQLCVDSTRIRE 166

Query: 130 LANSML 135
           L++  L
Sbjct: 167 LSSCFL 172