Miyakogusa Predicted Gene

Lj0g3v0257579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257579.1 tr|C1MLD4|C1MLD4_MICPC Ubiquinol cytochrome c
reductase OS=Micromonas pusilla (strain CCMP1545)
GN=M,28.57,7e-19,Ubiq_cyt_C_chap,Ubiquinol-cytochrome c
chaperone/UPF0174; BASIC FGF-REPRESSED ZIC BINDING PROTEIN
HO,NODE_18175_length_1266_cov_90.921799.path1.1
         (283 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g009320.1 | ubiquinol-cytochrome C chaperone protein | HC ...   421   e-118

>Medtr2g009320.1 | ubiquinol-cytochrome C chaperone protein | HC |
           chr2:1869086-1875086 | 20130731
          Length = 277

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/280 (75%), Positives = 233/280 (83%), Gaps = 11/280 (3%)

Query: 1   MLQRWRKAITPISIFRSHTGTKFANAGTRHTYAKVAAAPLPTIDD--DKPQQPLVNLDKM 58
           M + W KAI P+S FR+             TYA+VAAAP P      D+  +P VNLDKM
Sbjct: 1   MFRTWSKAIIPLSKFRT---------PMHQTYARVAAAPPPPPPPIIDQKFEPTVNLDKM 51

Query: 59  FWSKPCSLALPRDSLMRVEEPDYQGIKRFFLRLMLFYSKQSRSIRGANVVYQRIISQVDK 118
           FWSKPCSLALP DS +RV EPDYQG KRF  +LMLFYSKQS+SIRGANVVY+RI+SQVDK
Sbjct: 52  FWSKPCSLALPLDSPLRVNEPDYQGFKRFIFKLMLFYSKQSKSIRGANVVYRRIVSQVDK 111

Query: 119 PPIYEAFNLEKTFKTTYSLLILHMWLCLRRLKQEGNEGVEFGQYLYEIYNHDVELRVSKA 178
           P IYE FNLEKTFKTT+SLL+LHMW  LRR+KQEGN+GVEFGQYLYEIYNHDVELRVSKA
Sbjct: 112 PLIYEVFNLEKTFKTTFSLLVLHMWFYLRRVKQEGNDGVEFGQYLYEIYNHDVELRVSKA 171

Query: 179 GVNLLLAKWMKDLEKIFYGNIVAYDTALLPEAKPVDFSNVIWRNIFSDDGSSTPDAAASK 238
           GVNLLL KWMK+LEKIFYGNIVAYD A+LPEAKP DF+ VIWRNIFSDDGSSTPD AA +
Sbjct: 172 GVNLLLIKWMKELEKIFYGNIVAYDAAILPEAKPSDFATVIWRNIFSDDGSSTPDEAAWQ 231

Query: 239 SVHAMARYARREVSCMTLTDKEALYSGNFMFTSLKKEIRS 278
           SV A+ARYARREV+CMTLTDKEAL SGNFMFTSLK EIRS
Sbjct: 232 SVQALARYARREVNCMTLTDKEALLSGNFMFTSLKDEIRS 271