Miyakogusa Predicted Gene

Lj0g3v0257549.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257549.2 tr|G7IHZ6|G7IHZ6_MEDTR MMS19 nucleotide excision
repair protein-like protein OS=Medicago truncatula
,75,0,MMS19_N,Transcription protein MMS19, N-terminal; no
description,Armadillo-like helical; ARM repeat,A,CUFF.16960.2
         (513 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g100870.1 | MMS19 nucleotide excision repair-like protein ...   739   0.0  
Medtr5g085950.1 | MMS19 nucleotide excision repair-like protein ...   691   0.0  
Medtr5g055460.1 | hypothetical protein | HC | chr5:22834112-2283...    82   1e-15

>Medtr2g100870.1 | MMS19 nucleotide excision repair-like protein |
           HC | chr2:43381311-43393499 | 20130731
          Length = 1140

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/516 (71%), Positives = 412/516 (79%), Gaps = 10/516 (1%)

Query: 1   MAETTQLTRHIEAYVASSSTPTHQASSLDAIGYLVNTNALTLEALVREMEMYLTTSDHVV 60
           MAETTQLTRHIE+YV SSSTP+HQ +SLDAI  L+ TNALTLEALVRE++MYLT++D ++
Sbjct: 1   MAETTQLTRHIESYVDSSSTPSHQVASLDAIVLLIKTNALTLEALVRELDMYLTSTDTLI 60

Query: 61  RSRGILLLAEVLTRIASKPLGSSTIHSLAGFFNERLADWRAVRGALVGCLALLRRKSVVD 120
           RSRGILLLAEVLTRI S  L S TIHSL GFF ER+ADW+AVRGALVGCLAL+RRKSVV 
Sbjct: 61  RSRGILLLAEVLTRINSISLDSKTIHSLVGFFKERMADWKAVRGALVGCLALIRRKSVVG 120

Query: 121 ----SDAKAIAQSILQYLQVQSLGQYDRKXXXXXXXXXXXXYSDAVAPLGEDLIYGICEA 176
               SDAK+I QS LQ+LQVQSLG YDRK            + D++A L EDLI+GICEA
Sbjct: 121 MVTGSDAKSITQSFLQHLQVQSLGLYDRKLCFELLDYLLEHHVDSIASLEEDLIFGICEA 180

Query: 177 IDTEKDPECLMLAFHIVESLAQLYPEPSGLLGSFATDIFAILEAYFPIHFTHPNSGDIHI 236
           ID EKDPECLMLAFHIVESLA+LYP+PSGLL SFA D+F +LE YFPIHFTH  SGD H+
Sbjct: 181 IDAEKDPECLMLAFHIVESLARLYPDPSGLLASFARDVFDLLEPYFPIHFTHQTSGDTHV 240

Query: 237 QRDDLSRALMSAFSSTPLFEPFVIPXXXXXXXXXXXXAKIDSLKYLRECSSKYGAERISK 296
           QRDDLSR LMSAF+STP+FEPFVIP            AKIDSL+YLR CSSKYGAERI+K
Sbjct: 241 QRDDLSRTLMSAFASTPVFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAK 300

Query: 297 YAKAIWSSLKDTLYTYLGEPDFSFTQAPAGGIGFPKSDIAIEAMSLLQQLIVQNSSLLVS 356
           Y  AIWSSLKDTLYTYLGEPDFSFT AP  GI FPKS++ +EA+SLLQQLIVQNSS LVS
Sbjct: 301 YTGAIWSSLKDTLYTYLGEPDFSFTLAPTDGINFPKSEVVVEALSLLQQLIVQNSSQLVS 360

Query: 357 LIIDDQDVNMIFNTIASYDVYDAIPEQEKKKLHAIGRILYITAKTSITSCNAVFQSLFSQ 416
           LIIDD+DVN I N+IASY++YD I  QEKKKLHAIGRILYI+AKTSI SCNAVFQSLF +
Sbjct: 361 LIIDDEDVNFITNSIASYEMYDTISVQEKKKLHAIGRILYISAKTSIPSCNAVFQSLFLR 420

Query: 417 MMDNSGFSVSNIDSSLNVDSIPSQKVKLGFLYLCIELLSGCNELIVSEVPALQYNSKSET 476
           MMD  GFS SNID   N   + SQ V  GFLYLCIELLSGC EL++        + K ET
Sbjct: 421 MMDKLGFSASNIDGLQNGGILASQSVNFGFLYLCIELLSGCRELVILS------DEKRET 474

Query: 477 CCVILHSFSAPLFNAFGSVLAVRADRCPLGPDIYIG 512
            C ILHS SA LFNAFGSVLAV ADRCP  PDIYIG
Sbjct: 475 YCTILHSSSAVLFNAFGSVLAVTADRCPSHPDIYIG 510


>Medtr5g085950.1 | MMS19 nucleotide excision repair-like protein |
           HC | chr5:37149495-37160045 | 20130731
          Length = 1139

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/516 (68%), Positives = 396/516 (76%), Gaps = 10/516 (1%)

Query: 1   MAETTQLTRHIEAYVASSSTPTHQASSLDAIGYLVNTNALTLEALVREMEMYLTTSDHVV 60
           MAETTQLTRHI++Y+ SSST THQ SSLDAIG L+ TNALTLEALVRE+++YLT++D V+
Sbjct: 1   MAETTQLTRHIDSYIHSSSTSTHQVSSLDAIGLLIKTNALTLEALVRELDVYLTSTDTVI 60

Query: 61  RSRGILLLAEVLTRIASKPLGSSTIHSLAGFFNERLADWRAVRGALVGCLALLRRKS--- 117
           RSRGILLLAEVLTRI S  L S TIHSL GFF ERLADW+AVRGALVGCL L+RRKS   
Sbjct: 61  RSRGILLLAEVLTRINSISLDSKTIHSLVGFFKERLADWKAVRGALVGCLELIRRKSDVG 120

Query: 118 -VVDSDAKAIAQSILQYLQVQSLGQYDRKXXXXXXXXXXXXYSDAVAPLGEDLIYGICEA 176
            V  SDAKAIAQ  +Q+L  QSLG YDRK            ++D+VA L EDLI+G C A
Sbjct: 121 MVTGSDAKAIAQYFIQHLHFQSLGLYDRKLCFELLDCLLEHHADSVASLEEDLIFGFCAA 180

Query: 177 IDTEKDPECLMLAFHIVESLAQLYPEPSGLLGSFATDIFAILEAYFPIHFTHPNSGDIHI 236
           ID E+DPECLM AFHIVESLA+LYP+PSGL  SFA D+F +LE YFPI FTH  SGD H+
Sbjct: 181 IDAERDPECLMPAFHIVESLARLYPDPSGLFASFARDVFDLLEPYFPIQFTHTTSGDAHV 240

Query: 237 QRDDLSRALMSAFSSTPLFEPFVIPXXXXXXXXXXXXAKIDSLKYLRECSSKYGAERISK 296
            RDDLSR LM+AFSSTPLFEPFVIP            AKIDSL+YLR CSSKYGAERI+K
Sbjct: 241 HRDDLSRTLMNAFSSTPLFEPFVIPLLLQKLSSSLHSAKIDSLQYLRVCSSKYGAERIAK 300

Query: 297 YAKAIWSSLKDTLYTYLGEPDFSFTQAPAGGIGFPKSDIAIEAMSLLQQLIVQNSSLLVS 356
           Y  AIWSSLKDT+ TYL EP+FSFT AP  GI FPK+++ IEA+SLLQQLIVQNSS LVS
Sbjct: 301 YVGAIWSSLKDTINTYLMEPNFSFTLAPTDGIDFPKNEVVIEALSLLQQLIVQNSSQLVS 360

Query: 357 LIIDDQDVNMIFNTIASYDVYDAIPEQEKKKLHAIGRILYITAKTSITSCNAVFQSLFSQ 416
           LIIDD+DVN I N+IASY++YDA+  QEKKKLH IGRILYI AKTSI SCNAVFQSL  +
Sbjct: 361 LIIDDKDVNFIINSIASYEMYDAVSVQEKKKLHVIGRILYIFAKTSIPSCNAVFQSLLLR 420

Query: 417 MMDNSGFSVSNIDSSLNVDSIPSQKVKLGFLYLCIELLSGCNELIVSEVPALQYNSKSET 476
           MMD+ GFSVSNID   N   + SQ V  GFLYLCIELL+GC EL++          K  T
Sbjct: 421 MMDSLGFSVSNIDGLKNAGILASQSVNFGFLYLCIELLAGCRELVILS------EEKPGT 474

Query: 477 CCVILHSFSAPLFNAFGSVLAVRADRCPLGPDIYIG 512
           C  ILHS S  LFN+F SVLAV ADR P  PDIYIG
Sbjct: 475 CFTILHSSSDFLFNSFCSVLAVSADRFPPDPDIYIG 510


>Medtr5g055460.1 | hypothetical protein | HC |
           chr5:22834112-22830792 | 20130731
          Length = 108

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 68/144 (47%), Gaps = 66/144 (45%)

Query: 171 YGICEAIDTEKDPECLMLAFHIVESLAQLYPEPSGLLGSFATDIFAILEAYFPIHFTHPN 230
           +GICEAID EK+PECLML FHIVESLA+LYP           D++ +L ++         
Sbjct: 17  FGICEAIDEEKEPECLMLVFHIVESLARLYP-----------DLYGLLASF--------- 56

Query: 231 SGDIHIQRDDLSRALMSAFSSTPLFEPFVIPXXXXXXXXXXXXAKIDSLKYLRECSSKYG 290
                  RD                                    IDSL     CSSKYG
Sbjct: 57  ------ARD------------------------------------IDSLL----CSSKYG 70

Query: 291 AERISKYAKAIWSSLKDTLYTYLG 314
           +E+I+KY  AI SSLKDT+ TYLG
Sbjct: 71  SEKIAKYTDAILSSLKDTINTYLG 94