Miyakogusa Predicted Gene

Lj0g3v0257529.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257529.3 tr|B9PCE8|B9PCE8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_795088
PE=4,46.6,0.0000000000003,DNA REPAIR/TRANSCRIPTION PROTEIN
MET18/MMS19,NULL; seg,NULL,CUFF.16957.3
         (504 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g100870.1 | MMS19 nucleotide excision repair-like protein ...   738   0.0  
Medtr5g085950.1 | MMS19 nucleotide excision repair-like protein ...   691   0.0  

>Medtr2g100870.1 | MMS19 nucleotide excision repair-like protein | HC
            | chr2:43381311-43393499 | 20130731
          Length = 1140

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/506 (71%), Positives = 419/506 (82%), Gaps = 2/506 (0%)

Query: 1    MSYRRLVVEKMVELLSLDDVTLPFSLKVEALSDIGMTGMKYMLTILQGLGGAVFANLSEV 60
            MSYR  VV+K++E+LSLDD+ LPFSLKVEAL DIGMTGMK MLTILQ + GA+F NLSEV
Sbjct: 577  MSYRSFVVDKIMEMLSLDDIALPFSLKVEALYDIGMTGMKNMLTILQAMEGAIFTNLSEV 636

Query: 61   CRNVRSSEIAIQLLECYSCKLLPWIHENGGSEEFVVQFVVDIWSQAGNYVDLRAPFE-KG 119
              N+ S E A+QLLECYSCKLLPWI +NGG+EEFVVQF VDIW+QAGN +D  +PFE KG
Sbjct: 637  HSNLTSHETAVQLLECYSCKLLPWILKNGGAEEFVVQFAVDIWNQAGNCMDFNSPFEDKG 696

Query: 120  LLYAIMKVMQISVGSCSVESQNIILQKAYSIISSHTNFQFNEVGRSPLTPEKYDISPRDE 179
            LL A+MK M++SVG CSVESQN+ +QKAYS +SSHT FQ N+VGR PLT  KYDISPRDE
Sbjct: 697  LLDAMMKAMKVSVGCCSVESQNVTIQKAYSTLSSHTKFQLNDVGRLPLTSGKYDISPRDE 756

Query: 180  GMLSLFASVTIAVSPKTHIPNIRGVLRLFIIALLKGVVPVAQALGSMINKFISKANDAEN 239
            G+L LFASV IA+ PKTHIPNIRG+L LFII LLKGVVPVAQALGSM+NK  SK+N AE 
Sbjct: 757  GILLLFASVIIALRPKTHIPNIRGLLHLFIITLLKGVVPVAQALGSMLNKLTSKSNGAEK 816

Query: 240  FNDLTLEEALDVIFSTKIWVSSTDVLQGCNGTNNGSEMVLTDLCLGIANDRLLQTNAICG 299
             ++LTLEEALD+IF+TKIW SS ++LQ  NG++NGS++VLTDLCLGI NDRLLQ+NAICG
Sbjct: 817  SDELTLEEALDIIFNTKIWFSSNNMLQIYNGSSNGSDIVLTDLCLGITNDRLLQSNAICG 876

Query: 300  LSWIGKGLLLRGHEKIKDITMIFIECLISG-TKSALPLTKDSLENTEEQKWDPLIMKCSA 358
            LSWIGKGLLLRGHEKIKDITMIF ECLIS   K+++PL + SLENTE+QK DPL  KC+ 
Sbjct: 877  LSWIGKGLLLRGHEKIKDITMIFTECLISDRRKTSVPLVEGSLENTEKQKCDPLARKCAT 936

Query: 359  DAFHVLVSDSDDCLNRKFHAIIRPLYKQRFFSSIMPIFQQLITKXXXXXXXXXXXXXXAH 418
            +AFHVL+SD++DCLNRKFHA +RPLYKQRFFSS+MPIF QLI++              AH
Sbjct: 937  EAFHVLMSDAEDCLNRKFHATVRPLYKQRFFSSMMPIFLQLISRSDSLLSRSLLLRAFAH 996

Query: 419  IISDTPQIVIVSEAKKLIPVLLNCLSMLTDDIQDKDXXXXXXXXXXXXXTEKNGQEAVTE 478
            ++SDTP IVI++EAKKLIPVLL+CL MLT+DIQDKD             TEKNGQEAV E
Sbjct: 997  VMSDTPLIVILNEAKKLIPVLLDCLFMLTEDIQDKDILYGLLLVLSGMLTEKNGQEAVIE 1056

Query: 479  NAHIIINCLIKLVDYPHKTLVRETAV 504
            NAHIIIN LIKLVDYPHKTLVRETA+
Sbjct: 1057 NAHIIINGLIKLVDYPHKTLVRETAI 1082


>Medtr5g085950.1 | MMS19 nucleotide excision repair-like protein | HC
            | chr5:37149495-37160045 | 20130731
          Length = 1139

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/505 (68%), Positives = 405/505 (80%), Gaps = 1/505 (0%)

Query: 1    MSYRRLVVEKMVELLSLDDVTLPFSLKVEALSDIGMTGMKYMLTILQGLGGAVFANLSEV 60
            MSYR  V++K +ELLSLDD++LPFSLK+E LSDIGMT MK ML ILQGL GA+FANLSEV
Sbjct: 577  MSYRSFVLDKTMELLSLDDISLPFSLKLEVLSDIGMTSMKNMLKILQGLEGAIFANLSEV 636

Query: 61   CRNVRSSEIAIQLLECYSCKLLPWIHENGGSEEFVVQFVVDIWSQAGNYVDLRAPFE-KG 119
             RN+ S + A+QLLECYSCKLLPWI ENGG+EEF++QF VDIW+QAGN +D  +PFE KG
Sbjct: 637  HRNLTSYDTAVQLLECYSCKLLPWILENGGAEEFILQFSVDIWNQAGNCMDFNSPFEEKG 696

Query: 120  LLYAIMKVMQISVGSCSVESQNIILQKAYSIISSHTNFQFNEVGRSPLTPEKYDISPRDE 179
            LL A MK M+ SVG CS ESQN+I+ K+YSI+SS TNFQ N+V R PLT EKYDIS RDE
Sbjct: 697  LLDATMKAMKFSVGCCSEESQNVIILKSYSILSSRTNFQLNDVQRLPLTFEKYDISLRDE 756

Query: 180  GMLSLFASVTIAVSPKTHIPNIRGVLRLFIIALLKGVVPVAQALGSMINKFISKANDAEN 239
            G+L LFASV IA+ PKTH+PNIRG+L LFII LLKGVVPVAQALGSM+NK ISK+N AE 
Sbjct: 757  GILLLFASVIIALRPKTHVPNIRGILHLFIITLLKGVVPVAQALGSMVNKLISKSNGAEK 816

Query: 240  FNDLTLEEALDVIFSTKIWVSSTDVLQGCNGTNNGSEMVLTDLCLGIANDRLLQTNAICG 299
             ++LTLEEAL +IF+TKI  SS ++LQ C+G+ N +E+VLTD+CLG+ NDRLLQTNA+CG
Sbjct: 817  SDELTLEEALHIIFNTKICFSSDNMLQICDGSINRNEIVLTDVCLGMTNDRLLQTNAVCG 876

Query: 300  LSWIGKGLLLRGHEKIKDITMIFIECLISGTKSALPLTKDSLENTEEQKWDPLIMKCSAD 359
            LSWIGKGLLLRGHEKIKDIT I  ECLIS   S+LPL +   EN EE K D L  KC+AD
Sbjct: 877  LSWIGKGLLLRGHEKIKDITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAAD 936

Query: 360  AFHVLVSDSDDCLNRKFHAIIRPLYKQRFFSSIMPIFQQLITKXXXXXXXXXXXXXXAHI 419
            AFHVL+SD++DCLNRKFHA +RPLYKQRFFSS+MPIF QLI++              A +
Sbjct: 937  AFHVLMSDAEDCLNRKFHATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARV 996

Query: 420  ISDTPQIVIVSEAKKLIPVLLNCLSMLTDDIQDKDXXXXXXXXXXXXXTEKNGQEAVTEN 479
            +S TP IVI+++AK+LI VLL+CLSMLT+DIQDKD             TEKNGQEAV EN
Sbjct: 997  MSVTPLIVILNDAKELISVLLDCLSMLTEDIQDKDILYGLLLVLSGMLTEKNGQEAVIEN 1056

Query: 480  AHIIINCLIKLVDYPHKTLVRETAV 504
            AHIIINCLIKLVDY HKTLVRE+ +
Sbjct: 1057 AHIIINCLIKLVDYSHKTLVRESCI 1081