Miyakogusa Predicted Gene

Lj0g3v0257359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257359.2 Non Characterized Hit- tr|H0X9P8|H0X9P8_OTOGA
Uncharacterized protein (Fragment) OS=Otolemur garnett,30.27,1e-17,RNA
recognition motif,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; SUBFAMILY NOT NAME,CUFF.16913.2
         (265 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g073580.1 | heterogeneous nuclear ribonucleoprotein | HC |...   447   e-126
Medtr8g073580.2 | heterogeneous nuclear ribonucleoprotein | HC |...   389   e-108
Medtr3g061590.1 | heterogeneous nuclear ribonucleoprotein | HC |...   211   5e-55

>Medtr8g073580.1 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:31129922-31132310 | 20130731
          Length = 290

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/262 (85%), Positives = 230/262 (87%), Gaps = 1/262 (0%)

Query: 5   RGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGPGSFXXXXXXXXXXXXXXXXXXXXX 64
           RGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSG GS+                     
Sbjct: 29  RGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSYQHYGYAGGGFQPPPPFPVVRL 88

Query: 65  XXX-FNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQNMGR 123
               FNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVF GAMQVEFALQRDRQNMGR
Sbjct: 89  RGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGR 148

Query: 124 RYVEVFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPPSRSKRFSDKEQMEYTEILKMRGL 183
           RYVEVFRCKKQDYYNAVAGE++YEGIYDNDY GSPPPSRSKRFSDKEQM+YTEILKMRGL
Sbjct: 149 RYVEVFRCKKQDYYNAVAGEINYEGIYDNDYQGSPPPSRSKRFSDKEQMDYTEILKMRGL 208

Query: 184 PFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMSKDKMMIGS 243
           PF VTKSQI+DFFKDYKLIE RVHIACRPDGKATGEAYVEFVSPDEAKRAM KDKM IGS
Sbjct: 209 PFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGS 268

Query: 244 RYVELFPSTPDEARRAESRSRQ 265
           RYVELFPSTPDEARRAESRSRQ
Sbjct: 269 RYVELFPSTPDEARRAESRSRQ 290


>Medtr8g073580.2 | heterogeneous nuclear ribonucleoprotein | HC |
           chr8:31129922-31132310 | 20130731
          Length = 243

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/198 (94%), Positives = 192/198 (96%)

Query: 68  FNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQNMGRRYVE 127
           FNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVF GAMQVEFALQRDRQNMGRRYVE
Sbjct: 46  FNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVE 105

Query: 128 VFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPPSRSKRFSDKEQMEYTEILKMRGLPFAV 187
           VFRCKKQDYYNAVAGE++YEGIYDNDY GSPPPSRSKRFSDKEQM+YTEILKMRGLPF V
Sbjct: 106 VFRCKKQDYYNAVAGEINYEGIYDNDYQGSPPPSRSKRFSDKEQMDYTEILKMRGLPFLV 165

Query: 188 TKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMSKDKMMIGSRYVE 247
           TKSQI+DFFKDYKLIE RVHIACRPDGKATGEAYVEFVSPDEAKRAM KDKM IGSRYVE
Sbjct: 166 TKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVE 225

Query: 248 LFPSTPDEARRAESRSRQ 265
           LFPSTPDEARRAESRSRQ
Sbjct: 226 LFPSTPDEARRAESRSRQ 243



 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 177 ILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMSK 236
           ++++RGLPF  T   I+ FF    +++    +     G+ +GEA+V F    + + A+ +
Sbjct: 38  VVRLRGLPFNCTDIDILKFFAGLTIVD---VLLVNKSGRFSGEAFVVFAGAMQVEFALQR 94

Query: 237 DKMMIGSRYVELF 249
           D+  +G RYVE+F
Sbjct: 95  DRQNMGRRYVEVF 107


>Medtr3g061590.1 | heterogeneous nuclear ribonucleoprotein | HC |
           chr3:24591003-24586025 | 20130731
          Length = 259

 Score =  211 bits (537), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 156/255 (61%), Gaps = 13/255 (5%)

Query: 16  DGYEVGSKRQRMMESNPYFAVSSGPGSFXXXX--XXXXXXXXXXXXXXXXXXXXFNCTDI 73
           DG E+ SKRQR +++   F  S G                              F+CT+ 
Sbjct: 12  DGREMASKRQRTVDAGSSFYGSPGSSYMYNPSPYGYVSQPPPPPFPVVRLRGLPFDCTET 71

Query: 74  DILKFFAGLTIVDVLLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQNMGRRYVEVFRCKK 133
           D+ +FF GL IVDVL V+K G+FSGE F V    +QV+FALQR+RQN+GRRYVEVFR K+
Sbjct: 72  DVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQNIGRRYVEVFRSKR 131

Query: 134 QDYYNAVAGEVSYEGIYDNDYHGSPP---PSRSKRFSD-KEQMEYTEILKMRGLPFAVTK 189
           Q+YY A+A EVS       D  G  P     R+K + + K+  E+T +L++RGLPF+  K
Sbjct: 132 QEYYKAIANEVS-------DARGGSPRRSAPRAKSYDEGKDSAEHTGVLRLRGLPFSANK 184

Query: 190 SQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMSKDKMMIGSRYVELF 249
             I+DFFK+Y L ED +HI    +G+ +GEAYVEF + D++K AM+KD+M +GSRY+ELF
Sbjct: 185 DDIMDFFKEYVLSEDSIHIVMNSEGRPSGEAYVEFENADDSKAAMAKDRMTLGSRYIELF 244

Query: 250 PSTPDEARRAESRSR 264
           PST  E   A SR R
Sbjct: 245 PSTHGEMEDAISRGR 259