Miyakogusa Predicted Gene

Lj0g3v0257079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257079.1 tr|C9J5S9|C9J5S9_HUMAN DNA repair protein RAD51
homolog 2 (Fragment) OS=Homo sapiens GN=RAD51B PE=4 ,38.81,1e-16,DNA
REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2,NULL; RECA/RAD51/RADA DNA
STRAND-PAIRING FAMILY MEMBER,NUL,CUFF.16895.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g093050.1 | DNA repair RAD51-like protein | HC | chr2:3962...   363   e-101
Medtr4g111780.1 | DNA repair and recombination protein RadA | HC...    63   2e-10
Medtr2g445230.1 | DNA repair Rad51-like protein | HC | chr2:1969...    61   5e-10
Medtr4g024850.1 | DNA repair and recombination protein RadA | HC...    61   7e-10
Medtr4g124560.1 | DNA repair RAD51-like protein | HC | chr4:5155...    59   3e-09
Medtr4g062540.4 | DNA repair protein RAD51 | HC | chr4:23254009-...    57   1e-08
Medtr4g062540.1 | DNA repair protein RAD51 | HC | chr4:23254009-...    57   1e-08
Medtr4g062540.5 | DNA repair protein RAD51 | HC | chr4:23254009-...    57   1e-08
Medtr4g062540.2 | DNA repair protein RAD51 | HC | chr4:23254009-...    56   2e-08
Medtr4g062540.9 | DNA repair protein RAD51 | HC | chr4:23254009-...    56   2e-08
Medtr4g062540.7 | DNA repair protein RAD51 | HC | chr4:23254009-...    56   2e-08
Medtr4g062540.6 | DNA repair protein RAD51 | HC | chr4:23254009-...    56   2e-08
Medtr4g062540.8 | DNA repair protein RAD51 | HC | chr4:23254009-...    56   2e-08
Medtr4g062540.3 | DNA repair protein RAD51 | HC | chr4:23254009-...    55   3e-08
Medtr1g102670.1 | meiotic recombination protein DMC1, putative |...    49   3e-06

>Medtr2g093050.1 | DNA repair RAD51-like protein | HC |
           chr2:39621140-39628196 | 20130731
          Length = 436

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/191 (92%), Positives = 186/191 (97%)

Query: 1   MANKVIKQMGLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVV 60
           MANK+I Q+GLPKSIANIFTARNIITAKDALSLT+FELMELLDVGM+EVTSAMAHISE+V
Sbjct: 1   MANKLINQLGLPKSIANIFTARNIITAKDALSLTEFELMELLDVGMSEVTSAMAHISELV 60

Query: 61  CPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCL 120
           CPPCQTALLLMEQRVRNESLAGHLPT+LKGLDEALCGGIPFGV+TELVGP GIGKTQFCL
Sbjct: 61  CPPCQTALLLMEQRVRNESLAGHLPTQLKGLDEALCGGIPFGVVTELVGPPGIGKTQFCL 120

Query: 121 KLSLLASMPASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILI 180
           KLSLLAS+P + GGLDGRVIYIDVESKFSSKRLIEIG KSFPEIFHKKGMAQEMAGRILI
Sbjct: 121 KLSLLASLPVNYGGLDGRVIYIDVESKFSSKRLIEIGTKSFPEIFHKKGMAQEMAGRILI 180

Query: 181 LRPTSLSEFAE 191
           LRPTSLSEFAE
Sbjct: 181 LRPTSLSEFAE 191


>Medtr4g111780.1 | DNA repair and recombination protein RadA | HC |
           chr4:46186633-46190580 | 20130731
          Length = 347

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 65  QTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSL 124
           QTA  ++ +    E  +  + T    LD  L GGI    +TE+ G  GIGKTQ  ++L++
Sbjct: 74  QTAWDMLNE----ERFSSLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAV 129

Query: 125 LASMPASCGGLDGRVIYIDVESKFSSKRLIEIG------LKSFPEIFHKKGMA 171
              +P   GGL G+ IYID E  F  +R+++I       +  +   FHK   A
Sbjct: 130 NVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKDNQA 182


>Medtr2g445230.1 | DNA repair Rad51-like protein | HC |
           chr2:19697108-19696173 | 20130731
          Length = 287

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 91  LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
           LD  L GGIP   +TELV  +G GKTQ CL+L L A +P S GGL    +YI  E  F  
Sbjct: 26  LDRYLAGGIPTKSVTELVAESGSGKTQICLQLVLTAQLPPSHGGLSASSLYIFTEYPFPI 85

Query: 151 KRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAEW 192
           +RL ++  +SF  +    G+  +   R+ +    S  +F ++
Sbjct: 86  RRLKQLS-RSF--LSSNPGVGTDPLDRVFLRGIYSAEKFVDF 124


>Medtr4g024850.1 | DNA repair and recombination protein RadA | HC |
           chr4:8424452-8419903 | 20130731
          Length = 347

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 65  QTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSL 124
           QTA  ++ +    E  +  + T    LD  L GGI    +TE+ G  GIGKTQ  ++L++
Sbjct: 74  QTAWDMLNE----ERFSSLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAV 129

Query: 125 LASMPASCGGLDGRVIYIDVESKFSSKRLIEIG------LKSFPEIFHKKGMA 171
              +P   GGL G+ IYID E  F  +R+++I       L  +   F+K   A
Sbjct: 130 NVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQA 182


>Medtr4g124560.1 | DNA repair RAD51-like protein | HC |
           chr4:51555032-51558129 | 20130731
          Length = 341

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%)

Query: 83  HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
            + T  + LD+ L GGI  G +TEL G    GKTQ C  L +   +P   GG +G+ +YI
Sbjct: 103 QITTGSRELDKILEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 162

Query: 143 DVESKFSSKRLIEI 156
           D E  F  +RL++I
Sbjct: 163 DAEGTFRPQRLLQI 176


>Medtr4g062540.4 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 322

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL +S        C      VIY+D  + FS +R+
Sbjct: 121 TQVCL-MSSSTVAKNKCS-----VIYLDTGNSFSPQRI 152


>Medtr4g062540.1 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 315

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL +S        C      VIY+D  + FS +R+
Sbjct: 121 TQVCL-MSSSTVAKNKCS-----VIYLDTGNSFSPQRI 152


>Medtr4g062540.5 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 265

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL +S        C      VIY+D  + FS +R+
Sbjct: 121 TQVCL-MSSSTVAKNKCS-----VIYLDTGNSFSPQRI 152


>Medtr4g062540.2 | DNA repair protein RAD51 | HC |
           chr4:23254009-23249148 | 20130731
          Length = 242

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL +S        C      VIY+D  + FS +R+
Sbjct: 121 TQVCL-MSSSTVAKNKCS-----VIYLDTGNSFSPQRI 152


>Medtr4g062540.9 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251447 | 20130731
          Length = 194

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 11/99 (11%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCL-KLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL   S +A    S       VIY+D  + FS +R+
Sbjct: 121 TQVCLMSSSTVAKNKCS-------VIYLDTGNSFSPQRI 152


>Medtr4g062540.7 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251447 | 20130731
          Length = 194

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 11/99 (11%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCL-KLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL   S +A    S       VIY+D  + FS +R+
Sbjct: 121 TQVCLMSSSTVAKNKCS-------VIYLDTGNSFSPQRI 152


>Medtr4g062540.6 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251049 | 20130731
          Length = 264

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL  S      ++       VIY+D  + FS +R+
Sbjct: 121 TQVCLMSS------STVAKNKCSVIYLDTGNSFSPQRI 152


>Medtr4g062540.8 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251291 | 20130731
          Length = 207

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL +S        C      VIY+D  + FS +R+
Sbjct: 121 TQVCL-MSSSTVAKNKCS-----VIYLDTGNSFSPQRI 152


>Medtr4g062540.3 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251049 | 20130731
          Length = 257

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 56  ISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGK 115
           I + + PP    L L+E   RN+ +     T  +G+D  L GG+  G LTELVGP+  GK
Sbjct: 64  IVDALHPPVLNGLQLIEDAKRNKHV---FSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 116 TQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKRL 153
           TQ CL  S      ++       VIY+D  + FS +R+
Sbjct: 121 TQVCLMSS------STVAKNKCSVIYLDTGNSFSPQRI 152


>Medtr1g102670.1 | meiotic recombination protein DMC1, putative | HC
           | chr1:46400379-46403108 | 20130731
          Length = 311

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 84  LPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYID 143
           + T  + LDE L GGI    +TE  G    GKTQ    L +   +P S  G +G+V YID
Sbjct: 88  ITTGSQALDELLGGGIETLSITEAFGEFRSGKTQLAHTLCVSTQLPTSMHGGNGKVAYID 147

Query: 144 VESKFSSKRLIEI 156
            E  F   R++ I
Sbjct: 148 TEGTFRPDRIVAI 160