Miyakogusa Predicted Gene

Lj0g3v0256879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256879.1 Non Characterized Hit- tr|A9PFY2|A9PFY2_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,40.99,8e-17,coiled-coil,NULL; seg,NULL,CUFF.16955.1
         (363 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g066870.1 | acetyl-CoA carboxylase, carboxyl transferase, ...   214   9e-56
Medtr7g066870.2 | acetyl-CoA carboxylase, carboxyl transferase, ...   121   9e-28

>Medtr7g066870.1 | acetyl-CoA carboxylase, carboxyl transferase,
           alpha subunit | HC | chr7:24405339-24399341 | 20130731
          Length = 860

 Score =  214 bits (545), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 161/353 (45%), Positives = 207/353 (58%), Gaps = 69/353 (19%)

Query: 25  KKKDVPVAVKIPDAELEVEVEKLKQQILNANESSSKPPKLDLDEMIMKLEREVDQEYSEA 84
           + KD+P A KI D+++EV++EKLKQQIL   +SSS+PPKLDLDE + KLE ++++E    
Sbjct: 563 RNKDIPPA-KISDSKVEVQIEKLKQQIL---KSSSQPPKLDLDETLKKLEEKLEKEGKIE 618

Query: 85  VKALGLTDRFSKLQEEVSAANSDNQLSDPLLKDKIEKLKVEFEQGLSAAPNHGRLQNKLD 144
                                               KL+ +F + LSAAPN  +L+ K D
Sbjct: 619 ------------------------------------KLQADFNRRLSAAPNANKLKKKHD 642

Query: 145 MLKELSKVKHL--------------SETKKQKQEVRKKFVEVISNPRIKENYEALTAEIQ 190
              EL+KVK L               E     QE++KKF +V++NPRIKENYEAL +EIQ
Sbjct: 643 ---ELTKVKLLLSDRNKEVASSKINKEAATLTQELKKKFDDVMNNPRIKENYEALQSEIQ 699

Query: 191 RVGASSSSDLDDELKNKIIEFNKEVDSQLVNALKSVGLDVQLVKAEGRDSKESEVSEYVP 250
           R  ASS+SDLDDELK KIIEFN EVD Q+ NA+KSVGLDVQ VK  G+D  +  V E   
Sbjct: 700 R--ASSASDLDDELKKKIIEFNNEVDLQVANAVKSVGLDVQFVKP-GQDGNKFLVREI-- 754

Query: 251 XXXXXXXXXXXXXXXXXXXXDVKSKIEQLKLEVAKAGETPDPESKKRITSLMQQIKQGLV 310
                               D+K  IEQLK+EVAKAG TP+ ESK RI +L Q+IK+ L 
Sbjct: 755 -EELNKDVKKEIDVLANSSTDIKRMIEQLKVEVAKAGGTPNSESKNRIVALTQKIKRSLA 813

Query: 311 EAIDSSSIKEKYDNLVSKVSSKPEEVDGGLRGDSSTTTNDELREKVGANRTIS 363
           EA+ SSS+KE+Y+NL+S  S      DG L+  +   T+DELREKVGAN + S
Sbjct: 814 EAVGSSSLKERYENLMSGTSG-----DGSLKVGNG-LTDDELREKVGANCSFS 860



 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 92/121 (76%), Gaps = 7/121 (5%)

Query: 39  ELEVEVEKLKQQILNANESSSKPPKLDLDEMIMKLERE----VDQEYSEAVKALGLTDRF 94
           +LEV++EKLKQQIL   +SSS+PPKL+LD+ I KLE +    VDQE SEA KALGLT   
Sbjct: 442 KLEVQIEKLKQQIL---KSSSQPPKLNLDKTIKKLEEKLEKEVDQELSEAAKALGLTQSL 498

Query: 95  SKLQEEVSAANSDNQLSDPLLKDKIEKLKVEFEQGLSAAPNHGRLQNKLDMLKELSKVKH 154
           SKL++E S A+SD+Q  DPLLK KIEKL+ +F + LSAAPN  +L+ K  MLKEL+KVK 
Sbjct: 499 SKLRDEFSKASSDDQPLDPLLKGKIEKLQADFNRRLSAAPNANKLKKKHGMLKELTKVKL 558

Query: 155 L 155
           L
Sbjct: 559 L 559


>Medtr7g066870.2 | acetyl-CoA carboxylase, carboxyl transferase,
           alpha subunit | HC | chr7:24404819-24400154 | 20130731
          Length = 586

 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/198 (48%), Positives = 128/198 (64%), Gaps = 19/198 (9%)

Query: 39  ELEVEVEKLKQQILNANESSSKPPKLDLDEMIMKLERE----VDQEYSEAVKALGLTDRF 94
           +LEV++EKLKQQIL   +SSS+PPKL+LD+ I KLE +    VDQE SEA KALGLT   
Sbjct: 399 KLEVQIEKLKQQIL---KSSSQPPKLNLDKTIKKLEEKLEKEVDQELSEAAKALGLTQSL 455

Query: 95  SKLQEEVSAANSDNQLSDPLLKDKIEKLKVEFEQGLSAAPNHGRLQNKLDMLKELSKVKH 154
           SKL++E S A+SD+Q  DPLLK KIEKL+ +F + LSAAPN  +L+ K  MLKEL+KVK 
Sbjct: 456 SKLRDEFSKASSDDQPLDPLLKGKIEKLQADFNRRLSAAPNANKLKKKHGMLKELTKVKL 515

Query: 155 LSETKKQKQEVRKKFVEVISNPRIKENYEALTAEIQRVGASSSS----DLDDELKNKIIE 210
           L   + +     K     IS+ +++   E L  +I +   SSS     DLD+ LK    +
Sbjct: 516 LLSDRNKDIPPAK-----ISDSKVEVQIEKLKQQILK---SSSQPPKLDLDETLKKLEEK 567

Query: 211 FNKEVDSQLVNALKSVGL 228
             KEVD +L  A K++GL
Sbjct: 568 LEKEVDQELSEAAKALGL 585



 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 8/71 (11%)

Query: 25  KKKDVPVAVKIPDAELEVEVEKLKQQILNANESSSKPPKLDLDEMIMKLERE----VDQE 80
           + KD+P A KI D+++EV++EKLKQQIL   +SSS+PPKLDLDE + KLE +    VDQE
Sbjct: 520 RNKDIPPA-KISDSKVEVQIEKLKQQIL---KSSSQPPKLDLDETLKKLEEKLEKEVDQE 575

Query: 81  YSEAVKALGLT 91
            SEA KALGLT
Sbjct: 576 LSEAAKALGLT 586