Miyakogusa Predicted Gene

Lj0g3v0256829.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256829.2 Non Characterized Hit- tr|J9A5W9|J9A5W9_9PROT
Uncharacterized protein OS=alpha proteobacterium
IMCC1,43.14,2e-19,DUF962,Protein of unknown function
DUF962,CUFF.16870.2
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g066800.1 | transmembrane protein | HC | chr7:24362572-243...   183   3e-47
Medtr4g014970.1 | transmembrane protein | HC | chr4:4316861-4316...   156   3e-39

>Medtr7g066800.1 | transmembrane protein | HC |
           chr7:24362572-24365623 | 20130731
          Length = 112

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/112 (85%), Positives = 101/112 (90%)

Query: 1   MNFRSLEDFWVFYVSQHSKPSTRNWHFVGTILSIFSLLCSVLFSWWLLFFVPLSGYGCAW 60
           MNFR+LEDFW FYVSQHSK +TR+WHFVGT LS+  LLCS LFSWW L FVPLSGYGCAW
Sbjct: 1   MNFRNLEDFWAFYVSQHSKRATRHWHFVGTFLSLLFLLCSFLFSWWFLLFVPLSGYGCAW 60

Query: 61  YSHFFVEGNVPATFGHPFWSLICDYKMFGLMLTGQMDREIKRLGKRPVLQVF 112
           YSHFFVE NVPATFGHPFWS +CDYKMFGLMLTGQMDREIKRLGKRPVLQ F
Sbjct: 61  YSHFFVEKNVPATFGHPFWSFLCDYKMFGLMLTGQMDREIKRLGKRPVLQGF 112


>Medtr4g014970.1 | transmembrane protein | HC | chr4:4316861-4316523
           | 20130731
          Length = 112

 Score =  156 bits (395), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 87/110 (79%)

Query: 1   MNFRSLEDFWVFYVSQHSKPSTRNWHFVGTILSIFSLLCSVLFSWWLLFFVPLSGYGCAW 60
           MNF++ E+FW+FY++ HS PSTR WHF+GT+ SI  LL S++ +WW LF VPLS YG A 
Sbjct: 1   MNFKNKEEFWIFYMNHHSNPSTRKWHFIGTLFSIIFLLFSIILTWWFLFLVPLSFYGFAL 60

Query: 61  YSHFFVEGNVPATFGHPFWSLICDYKMFGLMLTGQMDREIKRLGKRPVLQ 110
           YSH F+E N P T G+PFWSL CD K+F  M++G+MDREIKRLGKRPVLQ
Sbjct: 61  YSHLFIEENFPVTIGYPFWSLYCDLKLFLFMVSGKMDREIKRLGKRPVLQ 110