Miyakogusa Predicted Gene

Lj0g3v0256709.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256709.2 Non Characterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,80.95,0.000000000003,seg,NULL,CUFF.16869.2
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g035660.1 | plastid transcriptionally active 14 protein | ...    86   9e-18

>Medtr2g035660.1 | plastid transcriptionally active 14 protein | HC
           | chr2:15050768-15056551 | 20130731
          Length = 480

 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)

Query: 17  EVIMEIPLELMLTISKKLPWMXXXXXXXXXXXXXXXXNPANPETDXXXXXXXXXXYAFDC 76
            VIMEIPLELMLTISKKLPWM                N  NPETD          ++FDC
Sbjct: 113 RVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFSFDC 172

Query: 77  QENFWQLYGDFLLSADESTSLFIATEVLLQQSQGCDFSPSLSMNT--------KGWYWLL 128
           ++NFWQ YGDFL S DESTSL +ATE  L + Q  D + ++ +          K W+  +
Sbjct: 173 KDNFWQYYGDFLPSEDESTSLLLATEEELLELQDPDLASTMRVQQQRVLEFWEKNWHSGV 232

Query: 129 SLKVWCVWR 137
            LKV  + R
Sbjct: 233 PLKVKRLAR 241