Miyakogusa Predicted Gene

Lj0g3v0256559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256559.1 Non Characterized Hit- tr|D7SJJ1|D7SJJ1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.35,9e-18,Homeodomain-like,Homeodomain-like; HTH_MYB,Myb domain;
TELOMERIC REPEAT BINDING PROTEIN 1,NULL; TELO,CUFF.16858.1
         (336 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g467090.3 | myb-like DNA-binding domain protein | HC | chr...    97   3e-20
Medtr3g467090.2 | myb-like DNA-binding domain protein | HC | chr...    97   3e-20
Medtr3g467090.1 | myb-like DNA-binding domain protein | HC | chr...    97   3e-20
Medtr3g117790.1 | myb-like DNA-binding domain protein | LC | chr...    77   2e-14
Medtr3g116690.1 | myb-like DNA-binding domain protein | LC | chr...    77   2e-14
Medtr3g117790.2 | myb-like DNA-binding domain protein | LC | chr...    77   2e-14
Medtr2g099610.1 | MYB transcription factor MYB91 | HC | chr2:427...    52   6e-07
Medtr5g015340.3 | MYB transcription factor | HC | chr5:5302686-5...    50   4e-06
Medtr5g015340.2 | MYB transcription factor | HC | chr5:5302686-5...    50   4e-06
Medtr5g015340.4 | MYB transcription factor | HC | chr5:5302686-5...    50   4e-06
Medtr8g018410.1 | MYB transcription factor MYB91 | HC | chr8:626...    50   4e-06
Medtr5g015340.1 | MYB transcription factor | HC | chr5:5303990-5...    50   4e-06

>Medtr3g467090.3 | myb-like DNA-binding domain protein | HC |
           chr3:27648325-27654367 | 20130731
          Length = 620

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 34/223 (15%)

Query: 1   MDGDAGSWAVEFIRGRIPNSTILRVLV-RTLAVAP--KMDSSYFKTMILGMLQECCWSVS 57
           M+ +  +W +EF+   + N+T+   L+ +TL + P    DS   KT++L +LQ    + S
Sbjct: 1   MNENISNWIMEFL---LRNTTVPDPLIQKTLTLLPLSGADSRLKKTLLLRVLQTHILNAS 57

Query: 58  XXXXXXXXXXXXXRSLDHEGSPISAAFRAAYCTVAVECTLKYLEVDLSSP-----KYIDA 112
                             +G  IS AF++AYC VAVECT+KYL   ++SP     +Y  A
Sbjct: 58  ISEASLQILEHLEEIYRDDGVSISNAFQSAYCAVAVECTVKYL---INSPEDPSGEYFSA 114

Query: 113 VQRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAI 172
           V+RIW G     R  SG      L S+   +W  EIE +L D  + +RL  L NTR  A+
Sbjct: 115 VRRIWRG-----RRGSG------LVSDGFVQWGEEIEGALWDVRVAERLVGL-NTRRDAV 162

Query: 173 QKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQG 215
            ++K FL E+W +   SFL+         ++ V+KG  L P G
Sbjct: 163 IEVKRFLKEAWGSMGDSFLD--------LIAMVSKGNGLCPGG 197



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 267 EYDDSTNVIKK----RRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVD 322
           E+DDS   + +    RR  ++W  LE+ETL AGV  FGEGNW  IL  +  +F+ R  VD
Sbjct: 551 EWDDSIENLPQQSLPRRKKRKWTSLEEETLRAGVRMFGEGNWRTILDFYSTIFEYRNGVD 610

Query: 323 LKDKWRNM 330
           LKDKWRNM
Sbjct: 611 LKDKWRNM 618


>Medtr3g467090.2 | myb-like DNA-binding domain protein | HC |
           chr3:27648325-27654367 | 20130731
          Length = 620

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 34/223 (15%)

Query: 1   MDGDAGSWAVEFIRGRIPNSTILRVLV-RTLAVAP--KMDSSYFKTMILGMLQECCWSVS 57
           M+ +  +W +EF+   + N+T+   L+ +TL + P    DS   KT++L +LQ    + S
Sbjct: 1   MNENISNWIMEFL---LRNTTVPDPLIQKTLTLLPLSGADSRLKKTLLLRVLQTHILNAS 57

Query: 58  XXXXXXXXXXXXXRSLDHEGSPISAAFRAAYCTVAVECTLKYLEVDLSSP-----KYIDA 112
                             +G  IS AF++AYC VAVECT+KYL   ++SP     +Y  A
Sbjct: 58  ISEASLQILEHLEEIYRDDGVSISNAFQSAYCAVAVECTVKYL---INSPEDPSGEYFSA 114

Query: 113 VQRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAI 172
           V+RIW G     R  SG      L S+   +W  EIE +L D  + +RL  L NTR  A+
Sbjct: 115 VRRIWRG-----RRGSG------LVSDGFVQWGEEIEGALWDVRVAERLVGL-NTRRDAV 162

Query: 173 QKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQG 215
            ++K FL E+W +   SFL+         ++ V+KG  L P G
Sbjct: 163 IEVKRFLKEAWGSMGDSFLD--------LIAMVSKGNGLCPGG 197



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 267 EYDDSTNVIKK----RRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVD 322
           E+DDS   + +    RR  ++W  LE+ETL AGV  FGEGNW  IL  +  +F+ R  VD
Sbjct: 551 EWDDSIENLPQQSLPRRKKRKWTSLEEETLRAGVRMFGEGNWRTILDFYSTIFEYRNGVD 610

Query: 323 LKDKWRNM 330
           LKDKWRNM
Sbjct: 611 LKDKWRNM 618


>Medtr3g467090.1 | myb-like DNA-binding domain protein | HC |
           chr3:27648325-27654367 | 20130731
          Length = 620

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 34/223 (15%)

Query: 1   MDGDAGSWAVEFIRGRIPNSTILRVLV-RTLAVAP--KMDSSYFKTMILGMLQECCWSVS 57
           M+ +  +W +EF+   + N+T+   L+ +TL + P    DS   KT++L +LQ    + S
Sbjct: 1   MNENISNWIMEFL---LRNTTVPDPLIQKTLTLLPLSGADSRLKKTLLLRVLQTHILNAS 57

Query: 58  XXXXXXXXXXXXXRSLDHEGSPISAAFRAAYCTVAVECTLKYLEVDLSSP-----KYIDA 112
                             +G  IS AF++AYC VAVECT+KYL   ++SP     +Y  A
Sbjct: 58  ISEASLQILEHLEEIYRDDGVSISNAFQSAYCAVAVECTVKYL---INSPEDPSGEYFSA 114

Query: 113 VQRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAI 172
           V+RIW G     R  SG      L S+   +W  EIE +L D  + +RL  L NTR  A+
Sbjct: 115 VRRIWRG-----RRGSG------LVSDGFVQWGEEIEGALWDVRVAERLVGL-NTRRDAV 162

Query: 173 QKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQG 215
            ++K FL E+W +   SFL+         ++ V+KG  L P G
Sbjct: 163 IEVKRFLKEAWGSMGDSFLD--------LIAMVSKGNGLCPGG 197



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 267 EYDDSTNVIKK----RRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVD 322
           E+DDS   + +    RR  ++W  LE+ETL AGV  FGEGNW  IL  +  +F+ R  VD
Sbjct: 551 EWDDSIENLPQQSLPRRKKRKWTSLEEETLRAGVRMFGEGNWRTILDFYSTIFEYRNGVD 610

Query: 323 LKDKWRNM 330
           LKDKWRNM
Sbjct: 611 LKDKWRNM 618


>Medtr3g117790.1 | myb-like DNA-binding domain protein | LC |
           chr3:55154859-55157302 | 20130731
          Length = 437

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 78  SPISAAFRAAYCTVAVECTLKYLEVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLF 137
           +PIS A ++AY  +AVECT+KYLE   +S     AV RIW+ R +++   S       L 
Sbjct: 84  NPISHAMKSAYFYIAVECTVKYLEAGGTSNYLQAAVDRIWNRRFQKLEEGSY------LL 137

Query: 138 SEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNF-DPSFLEQLAG 196
           + +   W T I  SL+D+    RLA+L NTR  AI++++ FL ++ +N   PSFL  +A 
Sbjct: 138 TPKWRLWKTLINDSLVDSQTMLRLASLSNTRKKAIKEVQRFLVDARNNLVGPSFLHSVAA 197



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 7/98 (7%)

Query: 236 EWKKFVNRSCSGTSYGT---LLPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQLEKETL 292
           EW   ++   +GTS GT    L SP+ KK+SPLKEY+     I KRR  K+W Q E++ L
Sbjct: 338 EWDDSIDGLQAGTSRGTSRIRLRSPETKKLSPLKEYEPKK--ITKRRKKKKWSQWEEDNL 395

Query: 293 LAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
             G+   GEGNW  IL ++   F  RT VDLKDKWRN+
Sbjct: 396 RTGIKLIGEGNWKSILRSY--AFDERTEVDLKDKWRNL 431


>Medtr3g116690.1 | myb-like DNA-binding domain protein | LC |
           chr3:54571175-54573963 | 20130731
          Length = 437

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 78  SPISAAFRAAYCTVAVECTLKYLEVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLF 137
           +PIS A ++AY  +AVECT+KYLE   +S     AV RIW+ R +++   S       L 
Sbjct: 84  NPISHAMKSAYFYIAVECTVKYLEAGGTSNYLQAAVDRIWNRRFQKLEEGSY------LL 137

Query: 138 SEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNF-DPSFLEQLAG 196
           + +   W T I  SL+D+    RLA+L NTR  AI++++ FL ++ +N   PSFL  +A 
Sbjct: 138 TPKWRLWKTLINDSLVDSQTMLRLASLSNTRKKAIKEVQRFLVDARNNLVGPSFLHSVAA 197



 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 58/98 (59%), Gaps = 7/98 (7%)

Query: 236 EWKKFVNRSCSGTSYGT---LLPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQLEKETL 292
           EW   ++   +GT  GT    L SP+ KK+SPLKEY+     I KRR  K+W Q E + L
Sbjct: 338 EWDDSIDGLQAGTVRGTSRIRLRSPETKKLSPLKEYEPKK--ITKRRKKKKWSQWEVDNL 395

Query: 293 LAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
             G+   GEGNW  IL ++   F  RT VDLKDKWRNM
Sbjct: 396 KTGIEVIGEGNWKSILRSYD--FDERTEVDLKDKWRNM 431


>Medtr3g117790.2 | myb-like DNA-binding domain protein | LC |
           chr3:55154859-55157273 | 20130731
          Length = 428

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 78  SPISAAFRAAYCTVAVECTLKYLEVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLF 137
           +PIS A ++AY  +AVECT+KYLE   +S     AV RIW+ R +++   S       L 
Sbjct: 84  NPISHAMKSAYFYIAVECTVKYLEAGGTSNYLQAAVDRIWNRRFQKLEEGSY------LL 137

Query: 138 SEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNF-DPSFLEQLAG 196
           + +   W T I  SL+D+    RLA+L NTR  AI++++ FL ++ +N   PSFL  +A 
Sbjct: 138 TPKWRLWKTLINDSLVDSQTMLRLASLSNTRKKAIKEVQRFLVDARNNLVGPSFLHSVAA 197



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 7/88 (7%)

Query: 246 SGTSYGT---LLPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQLEKETLLAGVNKFGEG 302
           +GTS GT    L SP+ KK+SPLKEY+     I KRR  K+W Q E++ L  G+   GEG
Sbjct: 339 AGTSRGTSRIRLRSPETKKLSPLKEYEPKK--ITKRRKKKKWSQWEEDNLRTGIKLIGEG 396

Query: 303 NWTFILSTHKDVFKGRTSVDLKDKWRNM 330
           NW  IL ++   F  RT VDLKDKWRN+
Sbjct: 397 NWKSILRSY--AFDERTEVDLKDKWRNL 422


>Medtr2g099610.1 | MYB transcription factor MYB91 | HC |
           chr2:42708481-42713744 | 20130731
          Length = 303

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTG 335
           ++W   E+E L  GV K+G G W  IL   +       R+++DLKDKWRN+N+  G
Sbjct: 6   QKWTAEEEEALHQGVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNVFPG 61


>Medtr5g015340.3 | MYB transcription factor | HC |
           chr5:5302686-5309527 | 20130731
          Length = 293

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILST--HKDVFKGRTSVDLKDKWRNMNL 332
           ++W   E+  L AGV K+G G W  IL+      + + R++VDLKDKWRN+N+
Sbjct: 6   QKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINV 58


>Medtr5g015340.2 | MYB transcription factor | HC |
           chr5:5302686-5309527 | 20130731
          Length = 293

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILST--HKDVFKGRTSVDLKDKWRNMNL 332
           ++W   E+  L AGV K+G G W  IL+      + + R++VDLKDKWRN+N+
Sbjct: 6   QKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINV 58


>Medtr5g015340.4 | MYB transcription factor | HC |
           chr5:5302686-5309527 | 20130731
          Length = 293

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILST--HKDVFKGRTSVDLKDKWRNMNL 332
           ++W   E+  L AGV K+G G W  IL+      + + R++VDLKDKWRN+N+
Sbjct: 6   QKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINV 58


>Medtr8g018410.1 | MYB transcription factor MYB91 | HC |
           chr8:6260085-6256115 | 20130731
          Length = 286

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHT 334
           +W   E++ L+AG+   G G W  IL   +   +   R+++DLKDKWRNMN++ 
Sbjct: 7   KWTNEEEDALIAGIETHGPGKWKAILLDPQFGPLLTSRSNIDLKDKWRNMNVNN 60


>Medtr5g015340.1 | MYB transcription factor | HC |
           chr5:5303990-5309225 | 20130731
          Length = 394

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILST--HKDVFKGRTSVDLKDKWRNMNL 332
           ++W   E+  L AGV K+G G W  IL+      + + R++VDLKDKWRN+N+
Sbjct: 6   QKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINV 58