Miyakogusa Predicted Gene

Lj0g3v0256499.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256499.1 Non Characterized Hit- tr|C6TKX5|C6TKX5_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4
S,61.46,1e-17,seg,NULL,CUFF.16851.1
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g093920.1 | transmembrane protein, putative | HC | chr1:42...    82   2e-16

>Medtr1g093920.1 | transmembrane protein, putative | HC |
          chr1:42152048-42152749 | 20130731
          Length = 91

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 8/96 (8%)

Query: 1  MATSHYSKSMHPSCKXXXXXXXXXXXXXXGSCSATRTGAT---MRLNQSTQILRPKNKPG 57
          MA S YSKSMH SCK              GSC++TR G T   +++N++T+ LR K+ P 
Sbjct: 1  MANSQYSKSMHLSCKTFSLTLLLVYLLFVGSCTSTRMGITTMKLKMNENTEHLRRKHNPR 60

Query: 58 FPYKGMVFNFFPKGSIVSPSGPSRRHNKVVDATPPN 93
               +VFNFFPKG  + PSGPS RHN  VD+TP N
Sbjct: 61 -----LVFNFFPKGMRIPPSGPSMRHNSEVDSTPKN 91