Miyakogusa Predicted Gene

Lj0g3v0256369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256369.1 Non Characterized Hit- tr|I1MKV6|I1MKV6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,52.13,0.000000000000004,seg,NULL,CUFF.16841.1
         (89 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g027480.1 | transmembrane protein, putative | HC | chr6:94...    56   9e-09
Medtr7g086770.1 | transmembrane protein, putative | HC | chr7:33...    55   2e-08

>Medtr6g027480.1 | transmembrane protein, putative | HC |
          chr6:9461945-9463358 | 20130731
          Length = 88

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 22 VSAVPATRTSALSGEDASVMPYFAQLLE-HSEEMHLDMEEGGFMARRLGLETHDYGGTGE 80
          V A+PATRT  L+ ED SV   FA L + H E+M + M+E   + RR+ LE HDY G G 
Sbjct: 21 VFAIPATRTKNLNSEDESV---FASLYKDHGEKMMVHMDER-LIGRRVNLELHDYEGPGA 76

Query: 81 NHDHDPNT 88
          N +H+P +
Sbjct: 77 NKEHNPKS 84


>Medtr7g086770.1 | transmembrane protein, putative | HC |
          chr7:33745320-33744365 | 20130731
          Length = 95

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 23 SAVPATRTSALSGEDASVMPYFAQLL-EHSEEMHLDMEEGGFMARRLGLETHDYGGTGEN 81
          SA  ATRT  L GED S  P  A +   + E++ +  +E   + RR+ LET DYGGTG N
Sbjct: 25 SASLATRTKNLKGEDTSSQPSLAMVDGNYGEKVMVVDKEEALVERRMDLETQDYGGTGAN 84

Query: 82 HDHDPN 87
           DH+P 
Sbjct: 85 TDHEPK 90