Miyakogusa Predicted Gene

Lj0g3v0255239.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0255239.2 Non Characterized Hit- tr|I1LV41|I1LV41_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.26,0,no
description,Exonuclease; Ribonuclease H-like,Ribonuclease H-like
domain; EXONUCLEASE,NULL; no des,CUFF.16764.2
         (265 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g078510.1 | RNA exonuclease-like protein | HC | chr2:32752...   295   2e-80
Medtr2g100280.1 | RNA exonuclease-like protein | HC | chr2:43066...   117   1e-26
Medtr2g061690.1 | RNA exonuclease-like protein | HC | chr2:26166...   105   4e-23
Medtr1g029410.2 | small RNA degrading nuclease | HC | chr1:10081...    80   2e-15
Medtr1g029410.1 | small RNA degrading nuclease | HC | chr1:10081...    80   2e-15
Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333...    67   1e-11
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335...    67   1e-11

>Medtr2g078510.1 | RNA exonuclease-like protein | HC |
           chr2:32752393-32757824 | 20130731
          Length = 283

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 147/179 (82%), Positives = 159/179 (88%), Gaps = 1/179 (0%)

Query: 32  SEEDTLKSILGKRKER-PDDESNDSQINPLIPVNDDASLTDAVAMDCEMVGVGSGNKSAL 90
           +++D   SILGKRK R  DD+S+D +INPL PVNDDAS+TDAVAMDCEMVGVG GNKSAL
Sbjct: 80  NDDDAPNSILGKRKGRIDDDDSDDCEINPLAPVNDDASVTDAVAMDCEMVGVGQGNKSAL 139

Query: 91  GRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLRKGKDFWTVQKKVAELIKGRI 150
           GRVTLVNKWGNVIYDEFV+P+ERVVDFRTKISG+RPRDLRK KDF T QKKVAELI GRI
Sbjct: 140 GRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFCTAQKKVAELIHGRI 199

Query: 151 LVGHALSNDFKALLLSHPKKDIRDTSEYQPFLNSNSRIALRHLAAERLGVKIQTGEHCP 209
           LVGHALSND KALLLSHPKKDIRDTSEY PFL S  R+ALRHLA+E LG KIQTGEHCP
Sbjct: 200 LVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSTGRVALRHLASEHLGAKIQTGEHCP 258


>Medtr2g100280.1 | RNA exonuclease-like protein | HC |
           chr2:43066107-43062965 | 20130731
          Length = 366

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 102/182 (56%), Gaps = 16/182 (8%)

Query: 64  NDDASLTDAVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKIS 122
           ND   L  A+AMDCEMVG GS G+     RV LV++  N+I+  +VKP   V ++R  I+
Sbjct: 130 NDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIPVTNYRYDIT 189

Query: 123 GLRPRDLRKGKDFWTVQKKVAELI--------------KGRILVGHALSNDFKALLLSHP 168
           GL    L+ G     V++K+ +++              K R+LVGH L++D   L +S+P
Sbjct: 190 GLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLGMSYP 249

Query: 169 KKDIRDTSEYQPFLNSN-SRIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKEW 227
              +RDT++Y+P + +N    +L++L    LG  IQTG H P +D  + M LY+R R + 
Sbjct: 250 DHLMRDTAKYRPLMKTNLVCYSLKYLTRTYLGYDIQTGTHNPYEDCISVMRLYKRIRGQS 309

Query: 228 EK 229
            K
Sbjct: 310 HK 311


>Medtr2g061690.1 | RNA exonuclease-like protein | HC |
           chr2:26166865-26169358 | 20130731
          Length = 350

 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 16/171 (9%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           AVA+ C+MVG GS G+     RV L++++ N+I+  +V P   V ++R + +G+R   LR
Sbjct: 130 AVALACKMVGGGSDGSLDLCARVCLIDEYENIIFHSYVIPPIPVTNYRYETTGIRHEYLR 189

Query: 131 KGKDFWTVQKKVAELI--------------KGRILVGHALSNDFKALLLSHPKKDIRDTS 176
                  VQ+K+ + +              K RILVGH L +D  +L + +P   IRDT+
Sbjct: 190 DAMPLKVVQRKIQDFLCNGEPIWTIRSRGGKARILVGHGLDHDLASLQIEYPTPKIRDTA 249

Query: 177 EYQPFL-NSNSRIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKE 226
           +Y P +  S    +L++L    LG  IQTG   P  D  AAM LY R R +
Sbjct: 250 KYPPLMKTSKLSNSLKYLTQTYLGYDIQTGIQDPYDDCVAAMRLYMRMRTQ 300


>Medtr1g029410.2 | small RNA degrading nuclease | HC |
           chr1:10081800-10091381 | 20130731
          Length = 413

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 71  DAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           + +A+DCEM   G G +  L RVTLV+  G V+ DE VKP   + D+ T+ SG+    L 
Sbjct: 254 EMLAVDCEMCITGEGFE--LTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEMLD 311

Query: 131 KGKDFWT-VQKKVAELI-KGRILVGHALSNDFKALLLSHPKKDIRDTSE-YQPFLNSNSR 187
                 T +Q+K  +L+ K  ILVGH+L ND  AL +SH    + DT+  Y+    S+ +
Sbjct: 312 GVTTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISH--DLVIDTAVLYKHPRGSSHK 369

Query: 188 IALRHLAAERLGVKI-QTGE-HCPIQDARAAM---LLYQRNRK 225
            ALR L    L  +I Q+G+ H  ++DARA M   LL  RN K
Sbjct: 370 SALRFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRNGK 412


>Medtr1g029410.1 | small RNA degrading nuclease | HC |
           chr1:10081820-10091351 | 20130731
          Length = 571

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 12/161 (7%)

Query: 71  DAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           + +A+DCEM   G G +  L RVTLV+  G V+ DE VKP   + D+ T+ SG+    L 
Sbjct: 217 EMLAVDCEMCITGEGFE--LTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEMLD 274

Query: 131 KGKDFWT-VQKKVAELI-KGRILVGHALSNDFKALLLSHPKKDIRDTSE-YQPFLNSNSR 187
                 T +Q+K  +L+ K  ILVGH+L ND  AL +SH    + DT+  Y+    S+ +
Sbjct: 275 GVTTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISHDL--VIDTAVLYKHPRGSSHK 332

Query: 188 IALRHLAAERLGVKI-QTGE-HCPIQDARAAM---LLYQRN 223
            ALR L    L  +I Q+G+ H  ++DARA M   LL  RN
Sbjct: 333 SALRFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRN 373


>Medtr1g023955.1 | small RNA degrading nuclease | HC |
           chr1:7733337-7739883 | 20130731
          Length = 550

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 70  TDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDL 129
           T  VA+DCEMV    G + AL +V +V+    V   + VKP + + D++T+I+G+  +DL
Sbjct: 140 TTMVAVDCEMVLCEDGTE-ALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDL 198

Query: 130 RKGK-DFWTVQKKVAELI-KGRILVGHALSNDFKALLLSHPKKDIRDTSE-YQPFLNS-N 185
                    +QK + +L+  G ILVGH+L ND + L L + +  + DT+  +QP   S +
Sbjct: 199 ETVTCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVR--VVDTAYIFQPLDGSIH 256

Query: 186 SRIALRHLAAERLGVKIQT--GEHCPIQDARAAMLL 219
            R +L  L    LG +++     H  + DA A M L
Sbjct: 257 RRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKL 292


>Medtr1g023955.2 | small RNA degrading nuclease | HC |
           chr1:7733526-7739883 | 20130731
          Length = 550

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 70  TDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDL 129
           T  VA+DCEMV    G + AL +V +V+    V   + VKP + + D++T+I+G+  +DL
Sbjct: 140 TTMVAVDCEMVLCEDGTE-ALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDL 198

Query: 130 RKGK-DFWTVQKKVAELI-KGRILVGHALSNDFKALLLSHPKKDIRDTSE-YQPFLNS-N 185
                    +QK + +L+  G ILVGH+L ND + L L + +  + DT+  +QP   S +
Sbjct: 199 ETVTCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVR--VVDTAYIFQPLDGSIH 256

Query: 186 SRIALRHLAAERLGVKIQT--GEHCPIQDARAAMLL 219
            R +L  L    LG +++     H  + DA A M L
Sbjct: 257 RRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKL 292