Miyakogusa Predicted Gene

Lj0g3v0254419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0254419.1 tr|Q5JMD6|Q5JMD6_ORYSJ Os01g0971900 protein
OS=Oryza sativa subsp. japonica GN=P0518C01.18 PE=4
SV=1,55.88,4e-19,seg,NULL; PUMILIO 1, 2,NULL; RNA BINDING PROTEIN
PUMILIO-RELATED,NULL,CUFF.16729.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g064670.2 | pumilio Mpt5 protein, putative | HC | chr4:241...   209   1e-54
Medtr4g064670.1 | pumilio Mpt5 protein, putative | HC | chr4:241...   209   1e-54
Medtr2g097670.2 | pumilio Mpt5 protein, putative | HC | chr2:417...   193   6e-50
Medtr2g097670.1 | pumilio Mpt5 protein, putative | HC | chr2:417...   193   6e-50
Medtr2g097670.3 | pumilio Mpt5 protein, putative | HC | chr2:417...   192   9e-50
Medtr1g094630.2 | pumilio-family RNA-binding repeatprotein | HC ...    91   4e-19
Medtr1g094630.3 | pumilio-family RNA-binding repeatprotein | HC ...    91   5e-19
Medtr1g094630.1 | pumilio-family RNA-binding repeatprotein | HC ...    91   5e-19
Medtr5g080390.1 | pumilio-family RNA-binding repeatprotein | HC ...    79   1e-15
Medtr2g036900.2 | pumilio-family RNA-binding repeatprotein | HC ...    48   4e-06
Medtr2g036900.1 | pumilio-family RNA-binding repeatprotein | HC ...    48   4e-06
Medtr2g036900.3 | pumilio-family RNA-binding repeatprotein | HC ...    48   5e-06

>Medtr4g064670.2 | pumilio Mpt5 protein, putative | HC |
           chr4:24134583-24140955 | 20130731
          Length = 954

 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 122/174 (70%), Gaps = 7/174 (4%)

Query: 1   MLSELGRRPVLGGNEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGS 60
           MLSELGRRPV+G NEG FGDEL+KEIGMLLREQRRQ+ DD ERELN +RSGSAPPTVEGS
Sbjct: 1   MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGS 60

Query: 61  LNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXXX 120
           LNAV                S+FPG    N   SEEELRSDPAYLQYYYSNV        
Sbjct: 61  LNAVGGLFGAGGVAGGF---SDFPGNKDVNGVVSEEELRSDPAYLQYYYSNVNLNPRLPP 117

Query: 121 XXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRKSE 170
              SKEDWR  QR    AS +GGIGDRRK N  DDSG RS+F+TPPGFN RK E
Sbjct: 118 PLLSKEDWRFQQRLKGGASAVGGIGDRRKGNMTDDSGGRSMFSTPPGFNFRKQE 171


>Medtr4g064670.1 | pumilio Mpt5 protein, putative | HC |
           chr4:24134583-24140955 | 20130731
          Length = 1025

 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 122/174 (70%), Gaps = 7/174 (4%)

Query: 1   MLSELGRRPVLGGNEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGS 60
           MLSELGRRPV+G NEG FGDEL+KEIGMLLREQRRQ+ DD ERELN +RSGSAPPTVEGS
Sbjct: 1   MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGS 60

Query: 61  LNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXXX 120
           LNAV                S+FPG    N   SEEELRSDPAYLQYYYSNV        
Sbjct: 61  LNAVGGLFGAGGVAGGF---SDFPGNKDVNGVVSEEELRSDPAYLQYYYSNVNLNPRLPP 117

Query: 121 XXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRKSE 170
              SKEDWR  QR    AS +GGIGDRRK N  DDSG RS+F+TPPGFN RK E
Sbjct: 118 PLLSKEDWRFQQRLKGGASAVGGIGDRRKGNMTDDSGGRSMFSTPPGFNFRKQE 171


>Medtr2g097670.2 | pumilio Mpt5 protein, putative | HC |
           chr2:41717566-41723738 | 20130731
          Length = 1047

 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 128/177 (72%), Gaps = 11/177 (6%)

Query: 1   MLSELGRRPVLGG-NEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEG 59
           MLS++GRRPV+GG NEGSFGDE +KEIGMLLR+QRR +VDDHE ELN YRSGSAPPTVEG
Sbjct: 1   MLSDMGRRPVIGGGNEGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNMYRSGSAPPTVEG 60

Query: 60  SLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXX 119
           SL+AV                SEF G    N F SEEELRSDPAYLQYYYSNV       
Sbjct: 61  SLSAVGGLFGGGSTAAAA--VSEFSG----NGFGSEEELRSDPAYLQYYYSNVNLNPRLP 114

Query: 120 XXXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRKSESE 172
               SKEDWR +QR    AS +GGIGDRRKVN  D++G R++FATPPGFN+RK E+E
Sbjct: 115 PPLLSKEDWRFSQRLKGGASAIGGIGDRRKVNGADENGGRAVFATPPGFNNRKRETE 171


>Medtr2g097670.1 | pumilio Mpt5 protein, putative | HC |
           chr2:41717566-41723738 | 20130731
          Length = 1047

 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 128/177 (72%), Gaps = 11/177 (6%)

Query: 1   MLSELGRRPVLGG-NEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEG 59
           MLS++GRRPV+GG NEGSFGDE +KEIGMLLR+QRR +VDDHE ELN YRSGSAPPTVEG
Sbjct: 1   MLSDMGRRPVIGGGNEGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNMYRSGSAPPTVEG 60

Query: 60  SLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXX 119
           SL+AV                SEF G    N F SEEELRSDPAYLQYYYSNV       
Sbjct: 61  SLSAVGGLFGGGSTAAAA--VSEFSG----NGFGSEEELRSDPAYLQYYYSNVNLNPRLP 114

Query: 120 XXXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRKSESE 172
               SKEDWR +QR    AS +GGIGDRRKVN  D++G R++FATPPGFN+RK E+E
Sbjct: 115 PPLLSKEDWRFSQRLKGGASAIGGIGDRRKVNGADENGGRAVFATPPGFNNRKRETE 171


>Medtr2g097670.3 | pumilio Mpt5 protein, putative | HC |
           chr2:41717566-41723738 | 20130731
          Length = 917

 Score =  192 bits (489), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 128/177 (72%), Gaps = 11/177 (6%)

Query: 1   MLSELGRRPVLGG-NEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEG 59
           MLS++GRRPV+GG NEGSFGDE +KEIGMLLR+QRR +VDDHE ELN YRSGSAPPTVEG
Sbjct: 1   MLSDMGRRPVIGGGNEGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNMYRSGSAPPTVEG 60

Query: 60  SLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXX 119
           SL+AV                SEF G    N F SEEELRSDPAYLQYYYSNV       
Sbjct: 61  SLSAVGGLFGGGSTAAAA--VSEFSG----NGFGSEEELRSDPAYLQYYYSNVNLNPRLP 114

Query: 120 XXXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRKSESE 172
               SKEDWR +QR    AS +GGIGDRRKVN  D++G R++FATPPGFN+RK E+E
Sbjct: 115 PPLLSKEDWRFSQRLKGGASAIGGIGDRRKVNGADENGGRAVFATPPGFNNRKRETE 171


>Medtr1g094630.2 | pumilio-family RNA-binding repeatprotein | HC |
           chr1:42524306-42528433 | 20130731
          Length = 787

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 84/160 (52%), Gaps = 15/160 (9%)

Query: 20  DELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGSLNAVXXXXXXXXXXXXXXP 79
           D L  E+  +L+EQR Q   + ER  + YRSGSAPPTVEGSL+A                
Sbjct: 52  DTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNS-- 109

Query: 80  FSEFPGANHEND-FASEEELRSDPAYLQYYYSNVXXXXXXXXXXXSKEDWRSAQRASVLG 138
                G ++ ND   +E+E+RS PAYL YYYS+            SKEDWR AQR    G
Sbjct: 110 -----GRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGG 164

Query: 139 G------IGDRRKVNRVDDSGARSLFATPPGFNSRKSESE 172
           G       GD RK N   +  + SLF+  PGF+ +++E++
Sbjct: 165 GSSSIERFGDWRK-NATSNGDSSSLFSMQPGFSVQQAEND 203


>Medtr1g094630.3 | pumilio-family RNA-binding repeatprotein | HC |
           chr1:42524306-42529214 | 20130731
          Length = 846

 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 84/160 (52%), Gaps = 15/160 (9%)

Query: 20  DELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGSLNAVXXXXXXXXXXXXXXP 79
           D L  E+  +L+EQR Q   + ER  + YRSGSAPPTVEGSL+A                
Sbjct: 21  DTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNS-- 78

Query: 80  FSEFPGANHEND-FASEEELRSDPAYLQYYYSNVXXXXXXXXXXXSKEDWRSAQRASVLG 138
                G ++ ND   +E+E+RS PAYL YYYS+            SKEDWR AQR    G
Sbjct: 79  -----GRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGG 133

Query: 139 G------IGDRRKVNRVDDSGARSLFATPPGFNSRKSESE 172
           G       GD RK N   +  + SLF+  PGF+ +++E++
Sbjct: 134 GSSSIERFGDWRK-NATSNGDSSSLFSMQPGFSVQQAEND 172


>Medtr1g094630.1 | pumilio-family RNA-binding repeatprotein | HC |
           chr1:42524277-42532024 | 20130731
          Length = 973

 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 85/163 (52%), Gaps = 15/163 (9%)

Query: 17  SFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGSLNAVXXXXXXXXXXXX 76
           +  D L  E+  +L+EQR Q   + ER  + YRSGSAPPTVEGSL+A             
Sbjct: 18  TLEDTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANN 77

Query: 77  XXPFSEFPGANHEND-FASEEELRSDPAYLQYYYSNVXXXXXXXXXXXSKEDWRSAQRAS 135
                   G ++ ND   +E+E+RS PAYL YYYS+            SKEDWR AQR  
Sbjct: 78  S-------GRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQ 130

Query: 136 VLGG------IGDRRKVNRVDDSGARSLFATPPGFNSRKSESE 172
             GG       GD RK N   +  + SLF+  PGF+ +++E++
Sbjct: 131 AGGGSSSIERFGDWRK-NATSNGDSSSLFSMQPGFSVQQAEND 172


>Medtr5g080390.1 | pumilio-family RNA-binding repeatprotein | HC |
           chr5:34410395-34418672 | 20130731
          Length = 1012

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 16/150 (10%)

Query: 1   MLSELGRRPVLGGNEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGS 60
           M+S++  R ++    G F ++L      +LR Q+ Q+V++ +RE+ R RSGSAPPTVEGS
Sbjct: 9   MMSDVAVRSMV--KNGDFAEDL-----AVLRRQQ-QEVNERDREVARLRSGSAPPTVEGS 60

Query: 61  LNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXXX 120
           + A                     G      F SEEE+R+DP+Y+ YYY N         
Sbjct: 61  MTAFGGLYGGSQVSY-----GGGGGGGGGRGFGSEEEIRADPSYVNYYYQNANLNPRLPP 115

Query: 121 XXXSKEDWRSAQRAS---VLGGIGDRRKVN 147
              SKEDWR +QR      +GGIGDRR++N
Sbjct: 116 PLVSKEDWRFSQRMKGGLKVGGIGDRRRLN 145


>Medtr2g036900.2 | pumilio-family RNA-binding repeatprotein | HC |
           chr2:16007791-15999134 | 20130731
          Length = 984

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 49  RSGSAPPTVEGSLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYY 108
           RSGSAPP++EGS  A+                      N E    SEE+LR+DPAYL YY
Sbjct: 57  RSGSAPPSMEGSFLAIENLLPLQNTQDASLTGLSRAVKNCE----SEEQLRADPAYLAYY 112

Query: 109 YSNVXXXXXXXXXXXSKEDWRSAQRASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRK 168
            SNV           S E+  +  R   +G  G+   ++ +D     SL       ++ K
Sbjct: 113 NSNVNLNPRLPPPLTSWENRHTGHR---VGSSGNNWGLSSIDHRSKSSLHLPQATLSTHK 169

Query: 169 SESE 172
            ESE
Sbjct: 170 EESE 173


>Medtr2g036900.1 | pumilio-family RNA-binding repeatprotein | HC |
           chr2:16007791-15999134 | 20130731
          Length = 984

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 49  RSGSAPPTVEGSLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFASEEELRSDPAYLQYY 108
           RSGSAPP++EGS  A+                      N E    SEE+LR+DPAYL YY
Sbjct: 57  RSGSAPPSMEGSFLAIENLLPLQNTQDASLTGLSRAVKNCE----SEEQLRADPAYLAYY 112

Query: 109 YSNVXXXXXXXXXXXSKEDWRSAQRASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRK 168
            SNV           S E+  +  R   +G  G+   ++ +D     SL       ++ K
Sbjct: 113 NSNVNLNPRLPPPLTSWENRHTGHR---VGSSGNNWGLSSIDHRSKSSLHLPQATLSTHK 169

Query: 169 SESE 172
            ESE
Sbjct: 170 EESE 173


>Medtr2g036900.3 | pumilio-family RNA-binding repeatprotein | HC |
           chr2:16007791-16000131 | 20130731
          Length = 926

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 24  KEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGSLNAVXXXXXXXXXXXXXXPFSEF 83
           +++G+LL+  R +      ++    RSGSAPP++EGS  A+                   
Sbjct: 35  EDLGVLLKGHRFRGSG---KDAAPSRSGSAPPSMEGSFLAIENLLPLQNTQDASLTGLSR 91

Query: 84  PGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXXXXXXSKEDWRSAQRASVLGGIGDR 143
              N E    SEE+LR+DPAYL YY SNV           S E+  +  R   +G  G+ 
Sbjct: 92  AVKNCE----SEEQLRADPAYLAYYNSNVNLNPRLPPPLTSWENRHTGHR---VGSSGNN 144

Query: 144 RKVNRVDDSGARSLFATPPGFNSRKSESE 172
             ++ +D     SL       ++ K ESE
Sbjct: 145 WGLSSIDHRSKSSLHLPQATLSTHKEESE 173