Miyakogusa Predicted Gene

Lj0g3v0253949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253949.1 Non Characterized Hit- tr|I1JEL5|I1JEL5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8679 PE=,89.15,0,WD40
repeat-like,WD40-repeat-containing domain; WD40,WD40 repeat; WD40
repeats,WD40 repeat; no descr,CUFF.16661.1
         (128 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g068875.1 | plant poly(A)+ RNA export protein | HC | chr8:...   240   2e-64
Medtr1g492860.1 | plant poly(A)+ RNA export protein | HC | chr1:...   212   9e-56
Medtr2g008410.1 | plant poly(A)+ RNA export protein | HC | chr2:...   203   3e-53
Medtr2g008410.2 | plant poly(A)+ RNA export protein | HC | chr2:...   203   4e-53
Medtr2g008410.4 | plant poly(A)+ RNA export protein | HC | chr2:...   136   5e-33
Medtr2g008410.3 | plant poly(A)+ RNA export protein | HC | chr2:...   135   6e-33
Medtr5g005120.1 | mitotic checkpoint protein BUB3 | HC | chr5:27...    53   8e-08
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei...    47   4e-06
Medtr3g078380.1 | myosin heavy chain kinase B-like protein | HC ...    47   6e-06
Medtr1g072140.1 | transducin/WD40 repeat protein | HC | chr1:320...    46   8e-06
Medtr1g021590.1 | transducin/WD40 repeat protein | HC | chr1:648...    46   9e-06

>Medtr8g068875.1 | plant poly(A)+ RNA export protein | HC |
           chr8:28820506-28812100 | 20130731
          Length = 348

 Score =  240 bits (613), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/130 (87%), Positives = 124/130 (95%), Gaps = 2/130 (1%)

Query: 1   MSTFGAANTN--PNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVV 58
           MS+FGAANTN  PNKS+EV+QPP+DS+SSL FSPKANFLVATSWDNQVRCWEI+KNG VV
Sbjct: 1   MSSFGAANTNTNPNKSYEVSQPPTDSISSLSFSPKANFLVATSWDNQVRCWEIAKNGTVV 60

Query: 59  NTTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLA 118
            +TPKASISHDQPVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQPVTVAMHDAPIK++A
Sbjct: 61  TSTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHDAPIKEIA 120

Query: 119 WIPEISLLAT 128
           WIPE+SLLAT
Sbjct: 121 WIPEMSLLAT 130


>Medtr1g492860.1 | plant poly(A)+ RNA export protein | HC |
           chr1:41653006-41655842 | 20130731
          Length = 347

 Score =  212 bits (539), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 106/128 (82%), Positives = 119/128 (92%)

Query: 1   MSTFGAANTNPNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNT 60
           MS+FGA NTNPNKSHEV  PPSDSVSSL FSPKANFL+ATSWDNQV CWE+SKNGN +++
Sbjct: 1   MSSFGATNTNPNKSHEVTSPPSDSVSSLSFSPKANFLIATSWDNQVLCWEVSKNGNTLSS 60

Query: 61  TPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWI 120
           TPKASISHDQPVLCSAWKDDGTTVF+G CDKQVKMWPLLSGGQP TVA+HD PIK++AWI
Sbjct: 61  TPKASISHDQPVLCSAWKDDGTTVFTGSCDKQVKMWPLLSGGQPTTVAVHDGPIKEIAWI 120

Query: 121 PEISLLAT 128
           PE+++LAT
Sbjct: 121 PEMNVLAT 128


>Medtr2g008410.1 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 351

 Score =  203 bits (516), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 108/117 (92%), Gaps = 1/117 (0%)

Query: 13  KSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNG-NVVNTTPKASISHDQP 71
           KS EV QPP+DSVSSL FSPK+N LVATSWDNQVRCWE++++G N V T PKASI+HD P
Sbjct: 17  KSIEVNQPPTDSVSSLNFSPKSNLLVATSWDNQVRCWEVARDGANNVATMPKASIAHDHP 76

Query: 72  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
           VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKD+AWIPE++LLAT
Sbjct: 77  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPITVAMHDAPIKDIAWIPEMNLLAT 133


>Medtr2g008410.2 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 333

 Score =  203 bits (516), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 108/117 (92%), Gaps = 1/117 (0%)

Query: 13  KSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNG-NVVNTTPKASISHDQP 71
           KS EV QPP+DSVSSL FSPK+N LVATSWDNQVRCWE++++G N V T PKASI+HD P
Sbjct: 17  KSIEVNQPPTDSVSSLNFSPKSNLLVATSWDNQVRCWEVARDGANNVATMPKASIAHDHP 76

Query: 72  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
           VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKD+AWIPE++LLAT
Sbjct: 77  VLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPITVAMHDAPIKDIAWIPEMNLLAT 133


>Medtr2g008410.4 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 286

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 66/67 (98%)

Query: 62  PKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIP 121
           PKASI+HD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKD+AWIP
Sbjct: 2   PKASIAHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPITVAMHDAPIKDIAWIP 61

Query: 122 EISLLAT 128
           E++LLAT
Sbjct: 62  EMNLLAT 68


>Medtr2g008410.3 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 268

 Score =  135 bits (341), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 66/67 (98%)

Query: 62  PKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIP 121
           PKASI+HD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQP+TVAMHDAPIKD+AWIP
Sbjct: 2   PKASIAHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPITVAMHDAPIKDIAWIP 61

Query: 122 EISLLAT 128
           E++LLAT
Sbjct: 62  EMNLLAT 68


>Medtr5g005120.1 | mitotic checkpoint protein BUB3 | HC |
           chr5:273901-270478 | 20130731
          Length = 344

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 15  HEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLC 74
            E+  PPSD +S++ FS  ++ L+ +SWD  VR ++ + +        +    H  PVL 
Sbjct: 14  RELTNPPSDGISNIRFSNHSDHLLVSSWDKTVRLYDATAD------FLRGEFLHGGPVLD 67

Query: 75  SAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAW 119
             + DD ++ FS   D  V+     +G + + +  HDAP++ + +
Sbjct: 68  CCFHDD-SSGFSASADNTVRRLIFATGKEDI-LGKHDAPVRCVEY 110


>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
           HC | chr6:91770-77124 | 20130731
          Length = 760

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 26  SSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVF 85
           +S+ F P   F  + S D  ++ W+I K G +   T K    H + V    +  DG  V 
Sbjct: 105 TSVDFHPFGEFFASGSLDTNLKIWDIRKKGCI--HTYKG---HTRGVNAIRFTPDGRWVV 159

Query: 86  SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
           SGG D  VK+W L +G        H+  I+ + + P   LLAT
Sbjct: 160 SGGEDNTVKLWDLTAGKLLHDFKSHEGQIQCIDFHPSEFLLAT 202


>Medtr3g078380.1 | myosin heavy chain kinase B-like protein | HC |
           chr3:35313647-35311848 | 20130731
          Length = 414

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 23  DSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGT 82
           D+VSSL  S    FL + SWD  ++ W  +K+   + +   A   HD  +       DG 
Sbjct: 183 DTVSSLALSKDGKFLYSVSWDRTIKIWR-TKDFTCLESITNA---HDDAINAVVVSYDG- 237

Query: 83  TVFSGGCDKQVKMWPLLSG 101
           T +SG  DK++K+W  L G
Sbjct: 238 TFYSGSADKRIKVWKNLQG 256


>Medtr1g072140.1 | transducin/WD40 repeat protein | HC |
           chr1:32005480-32003360 | 20130731
          Length = 316

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 30  FSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVFSGGC 89
           F+P++N++V+ S+D  VR WE+ K G  V+       +H  PV    +  DG+ + SG  
Sbjct: 119 FNPQSNYIVSGSFDETVRVWEV-KTGKSVHVIK----AHAMPVTSVDFNRDGSLIVSGSH 173

Query: 90  DKQVKMWPLLSGGQPVTVAMHDAPIKDLA 118
           D   K+W   SG    T+     P    A
Sbjct: 174 DGSCKIWDTNSGALLKTLIDDKVPAVSFA 202


>Medtr1g021590.1 | transducin/WD40 repeat protein | HC |
           chr1:6486978-6485061 | 20130731
          Length = 470

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 22  SDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDG 81
           SD+VS L  SP   +L + SWD  V+ W I+ +  + + T     SH+  V      +DG
Sbjct: 219 SDAVSCLSLSPDKTYLYSASWDRTVKVWRIADSKCLESIT-----SHEDAVNAVVCGNDG 273

Query: 82  TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
             VFSG  D  VK+W     G+     M    +K    +  +++ +T
Sbjct: 274 -IVFSGSADGTVKVWRREPRGKATKHVMVKQLLKQECAVTALAIDST 319