Miyakogusa Predicted Gene

Lj0g3v0253939.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253939.1 Non Characterized Hit- tr|I1JEL5|I1JEL5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8679 PE=,93.96,0,WD40
repeats,WD40 repeat; WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; ,CUFF.16660.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g068875.1 | plant poly(A)+ RNA export protein | HC | chr8:...   368   e-102
Medtr2g008410.1 | plant poly(A)+ RNA export protein | HC | chr2:...   362   e-100
Medtr2g008410.4 | plant poly(A)+ RNA export protein | HC | chr2:...   360   e-100
Medtr1g492860.1 | plant poly(A)+ RNA export protein | HC | chr1:...   337   3e-93
Medtr2g008410.2 | plant poly(A)+ RNA export protein | HC | chr2:...   325   1e-89
Medtr2g008410.3 | plant poly(A)+ RNA export protein | HC | chr2:...   324   3e-89
Medtr5g005120.1 | mitotic checkpoint protein BUB3 | HC | chr5:27...   132   3e-31
Medtr5g043000.1 | transducin/WD40 repeat protein | HC | chr5:189...    72   4e-13

>Medtr8g068875.1 | plant poly(A)+ RNA export protein | HC |
           chr8:28820506-28812100 | 20130731
          Length = 348

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 169/182 (92%), Positives = 175/182 (96%)

Query: 1   MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 167 MVVGTADRNLIVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 226

Query: 61  DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
           DAQQSKNFTFKCHRE+NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RC
Sbjct: 227 DAQQSKNFTFKCHRESNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMQRC 286

Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
           SQPIPC  FNNDGSIYAYAVCYDWSKGAENHNP TAK  I++HLPQESEVKGKPR G+TG
Sbjct: 287 SQPIPCGTFNNDGSIYAYAVCYDWSKGAENHNPTTAKNYIYMHLPQESEVKGKPRAGSTG 346

Query: 181 RK 182
           R+
Sbjct: 347 RR 348


>Medtr2g008410.1 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 351

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/182 (90%), Positives = 176/182 (96%)

Query: 1   MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
           MVVGTADRN++V+NLQNPQ E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 170 MVVGTADRNIIVYNLQNPQVEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLD 229

Query: 61  DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
           D+QQ+KNFTFKCHRE NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RC
Sbjct: 230 DSQQAKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 289

Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
           SQP+PCSAFNNDGSI+AY+VCYDWSKGAENHNPATAK  IFLHLPQESEVKGKPR GATG
Sbjct: 290 SQPVPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATG 349

Query: 181 RK 182
           R+
Sbjct: 350 RR 351


>Medtr2g008410.4 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 286

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/182 (90%), Positives = 176/182 (96%)

Query: 1   MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
           MVVGTADRN++V+NLQNPQ E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 105 MVVGTADRNIIVYNLQNPQVEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLD 164

Query: 61  DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
           D+QQ+KNFTFKCHRE NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RC
Sbjct: 165 DSQQAKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 224

Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
           SQP+PCSAFNNDGSI+AY+VCYDWSKGAENHNPATAK  IFLHLPQESEVKGKPR GATG
Sbjct: 225 SQPVPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATG 284

Query: 181 RK 182
           R+
Sbjct: 285 RR 286


>Medtr1g492860.1 | plant poly(A)+ RNA export protein | HC |
           chr1:41653006-41655842 | 20130731
          Length = 347

 Score =  337 bits (865), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 153/182 (84%), Positives = 168/182 (92%)

Query: 1   MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
           MVVGTADRNL+VFNLQNPQ EYKRI+SPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 165 MVVGTADRNLIVFNLQNPQNEYKRIISPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 224

Query: 61  DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
           DA Q KNFTF+CHRENN+IYSVNSLNFHPVHHTFATAGSDGAF+FWDK+SKQRLK M RC
Sbjct: 225 DALQDKNFTFRCHRENNDIYSVNSLNFHPVHHTFATAGSDGAFHFWDKNSKQRLKNMQRC 284

Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
           SQPIPC  FNNDGSIYAYAVCYDWSKGAE HNP TAK  I+LH+PQ+++VKG+ +T +TG
Sbjct: 285 SQPIPCGTFNNDGSIYAYAVCYDWSKGAETHNPTTAKNYIYLHIPQDTDVKGRSQTASTG 344

Query: 181 RK 182
            +
Sbjct: 345 GR 346


>Medtr2g008410.2 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 333

 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 149/163 (91%), Positives = 157/163 (96%)

Query: 20  TEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSKNFTFKCHRENNEI 79
            E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLDD+QQ+KNFTFKCHRE NEI
Sbjct: 171 VEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQAKNFTFKCHREGNEI 230

Query: 80  YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYA 139
           YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQP+PCSAFNNDGSI+AY+
Sbjct: 231 YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPVPCSAFNNDGSIFAYS 290

Query: 140 VCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATGRK 182
           VCYDWSKGAENHNPATAK  IFLHLPQESEVKGKPR GATGR+
Sbjct: 291 VCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATGRR 333


>Medtr2g008410.3 | plant poly(A)+ RNA export protein | HC |
           chr2:1466615-1458038 | 20130731
          Length = 268

 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 149/163 (91%), Positives = 157/163 (96%)

Query: 20  TEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSKNFTFKCHRENNEI 79
            E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLDD+QQ+KNFTFKCHRE NEI
Sbjct: 106 VEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQAKNFTFKCHREGNEI 165

Query: 80  YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYA 139
           YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQP+PCSAFNNDGSI+AY+
Sbjct: 166 YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPVPCSAFNNDGSIFAYS 225

Query: 140 VCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATGRK 182
           VCYDWSKGAENHNPATAK  IFLHLPQESEVKGKPR GATGR+
Sbjct: 226 VCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATGRR 268


>Medtr5g005120.1 | mitotic checkpoint protein BUB3 | HC |
           chr5:273901-270478 | 20130731
          Length = 344

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 108/181 (59%), Gaps = 10/181 (5%)

Query: 1   MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
           +VV TA R++ V++++N     +R  S LKYQTRCV  +P+  G+ + S+EGRV +   D
Sbjct: 161 LVVATAGRHVNVYDMRNMSCPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 220

Query: 61  --DAQQSKNFTFKCHRENNE----IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 114
             +A Q+K + FKCHR++      +Y VN++ FHP++ TFAT G DG  N WD ++K+RL
Sbjct: 221 LSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRL 280

Query: 115 KAMSRCSQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKP 174
              S+    +   +F+ DG + A A  Y + +G + H+    +  I++    E EVK KP
Sbjct: 281 YQYSKYPSSVAALSFSRDGRLLAVASSYTFEEGPKPHD----QDAIYVRSVNEIEVKPKP 336

Query: 175 R 175
           +
Sbjct: 337 K 337


>Medtr5g043000.1 | transducin/WD40 repeat protein | HC |
           chr5:18915641-18910614 | 20130731
          Length = 334

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 10/138 (7%)

Query: 32  QTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSK-NFTFKCHRENNE----IYSVNSLN 86
           Q RCV++ P  +GF VGS++GRV +   + +  +   +TF+CH ++ +    + SVN++ 
Sbjct: 185 QLRCVSSIPYAEGFAVGSVDGRVALQVSNSSNSNDIGYTFRCHPKSKDGQHHLASVNNIA 244

Query: 87  FHPVHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYAVCYDWS 145
           F P+    F T   +G    WD  S++RL    R S  +   ++N+ G + A A  Y + 
Sbjct: 245 FSPLMSGAFVTGDDEGYATIWDARSRKRLIEFPRYSNSVASLSYNHSGQLLAVASSYTFQ 304

Query: 146 KGAENHNPATAKTNIFLH 163
           +  E   P      +F+H
Sbjct: 305 EAKEIVEPP----QVFIH 318