Miyakogusa Predicted Gene
- Lj0g3v0253939.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0253939.1 Non Characterized Hit- tr|I1JEL5|I1JEL5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8679 PE=,93.96,0,WD40
repeats,WD40 repeat; WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; ,CUFF.16660.1
(182 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g068875.1 | plant poly(A)+ RNA export protein | HC | chr8:... 368 e-102
Medtr2g008410.1 | plant poly(A)+ RNA export protein | HC | chr2:... 362 e-100
Medtr2g008410.4 | plant poly(A)+ RNA export protein | HC | chr2:... 360 e-100
Medtr1g492860.1 | plant poly(A)+ RNA export protein | HC | chr1:... 337 3e-93
Medtr2g008410.2 | plant poly(A)+ RNA export protein | HC | chr2:... 325 1e-89
Medtr2g008410.3 | plant poly(A)+ RNA export protein | HC | chr2:... 324 3e-89
Medtr5g005120.1 | mitotic checkpoint protein BUB3 | HC | chr5:27... 132 3e-31
Medtr5g043000.1 | transducin/WD40 repeat protein | HC | chr5:189... 72 4e-13
>Medtr8g068875.1 | plant poly(A)+ RNA export protein | HC |
chr8:28820506-28812100 | 20130731
Length = 348
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/182 (92%), Positives = 175/182 (96%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
MVVGTADRNL+VFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 167 MVVGTADRNLIVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 226
Query: 61 DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
DAQQSKNFTFKCHRE+NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RC
Sbjct: 227 DAQQSKNFTFKCHRESNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMQRC 286
Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
SQPIPC FNNDGSIYAYAVCYDWSKGAENHNP TAK I++HLPQESEVKGKPR G+TG
Sbjct: 287 SQPIPCGTFNNDGSIYAYAVCYDWSKGAENHNPTTAKNYIYMHLPQESEVKGKPRAGSTG 346
Query: 181 RK 182
R+
Sbjct: 347 RR 348
>Medtr2g008410.1 | plant poly(A)+ RNA export protein | HC |
chr2:1466615-1458038 | 20130731
Length = 351
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/182 (90%), Positives = 176/182 (96%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
MVVGTADRN++V+NLQNPQ E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 170 MVVGTADRNIIVYNLQNPQVEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLD 229
Query: 61 DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
D+QQ+KNFTFKCHRE NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RC
Sbjct: 230 DSQQAKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 289
Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
SQP+PCSAFNNDGSI+AY+VCYDWSKGAENHNPATAK IFLHLPQESEVKGKPR GATG
Sbjct: 290 SQPVPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATG 349
Query: 181 RK 182
R+
Sbjct: 350 RR 351
>Medtr2g008410.4 | plant poly(A)+ RNA export protein | HC |
chr2:1466615-1458038 | 20130731
Length = 286
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/182 (90%), Positives = 176/182 (96%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
MVVGTADRN++V+NLQNPQ E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 105 MVVGTADRNIIVYNLQNPQVEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLD 164
Query: 61 DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
D+QQ+KNFTFKCHRE NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RC
Sbjct: 165 DSQQAKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRC 224
Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
SQP+PCSAFNNDGSI+AY+VCYDWSKGAENHNPATAK IFLHLPQESEVKGKPR GATG
Sbjct: 225 SQPVPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATG 284
Query: 181 RK 182
R+
Sbjct: 285 RR 286
>Medtr1g492860.1 | plant poly(A)+ RNA export protein | HC |
chr1:41653006-41655842 | 20130731
Length = 347
Score = 337 bits (865), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 153/182 (84%), Positives = 168/182 (92%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
MVVGTADRNL+VFNLQNPQ EYKRI+SPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 165 MVVGTADRNLIVFNLQNPQNEYKRIISPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 224
Query: 61 DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
DA Q KNFTF+CHRENN+IYSVNSLNFHPVHHTFATAGSDGAF+FWDK+SKQRLK M RC
Sbjct: 225 DALQDKNFTFRCHRENNDIYSVNSLNFHPVHHTFATAGSDGAFHFWDKNSKQRLKNMQRC 284
Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
SQPIPC FNNDGSIYAYAVCYDWSKGAE HNP TAK I+LH+PQ+++VKG+ +T +TG
Sbjct: 285 SQPIPCGTFNNDGSIYAYAVCYDWSKGAETHNPTTAKNYIYLHIPQDTDVKGRSQTASTG 344
Query: 181 RK 182
+
Sbjct: 345 GR 346
>Medtr2g008410.2 | plant poly(A)+ RNA export protein | HC |
chr2:1466615-1458038 | 20130731
Length = 333
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 149/163 (91%), Positives = 157/163 (96%)
Query: 20 TEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSKNFTFKCHRENNEI 79
E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLDD+QQ+KNFTFKCHRE NEI
Sbjct: 171 VEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQAKNFTFKCHREGNEI 230
Query: 80 YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYA 139
YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQP+PCSAFNNDGSI+AY+
Sbjct: 231 YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPVPCSAFNNDGSIFAYS 290
Query: 140 VCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATGRK 182
VCYDWSKGAENHNPATAK IFLHLPQESEVKGKPR GATGR+
Sbjct: 291 VCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATGRR 333
>Medtr2g008410.3 | plant poly(A)+ RNA export protein | HC |
chr2:1466615-1458038 | 20130731
Length = 268
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 149/163 (91%), Positives = 157/163 (96%)
Query: 20 TEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSKNFTFKCHRENNEI 79
E+KRIVSPLKYQTRC+AAFPDQQGFLVGSIEGRVGVHHLDD+QQ+KNFTFKCHRE NEI
Sbjct: 106 VEFKRIVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDSQQAKNFTFKCHREGNEI 165
Query: 80 YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYA 139
YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAM RCSQP+PCSAFNNDGSI+AY+
Sbjct: 166 YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPVPCSAFNNDGSIFAYS 225
Query: 140 VCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATGRK 182
VCYDWSKGAENHNPATAK IFLHLPQESEVKGKPR GATGR+
Sbjct: 226 VCYDWSKGAENHNPATAKPYIFLHLPQESEVKGKPRIGATGRR 268
>Medtr5g005120.1 | mitotic checkpoint protein BUB3 | HC |
chr5:273901-270478 | 20130731
Length = 344
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 108/181 (59%), Gaps = 10/181 (5%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
+VV TA R++ V++++N +R S LKYQTRCV +P+ G+ + S+EGRV + D
Sbjct: 161 LVVATAGRHVNVYDMRNMSCPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 220
Query: 61 --DAQQSKNFTFKCHRENNE----IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 114
+A Q+K + FKCHR++ +Y VN++ FHP++ TFAT G DG N WD ++K+RL
Sbjct: 221 LSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRL 280
Query: 115 KAMSRCSQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKP 174
S+ + +F+ DG + A A Y + +G + H+ + I++ E EVK KP
Sbjct: 281 YQYSKYPSSVAALSFSRDGRLLAVASSYTFEEGPKPHD----QDAIYVRSVNEIEVKPKP 336
Query: 175 R 175
+
Sbjct: 337 K 337
>Medtr5g043000.1 | transducin/WD40 repeat protein | HC |
chr5:18915641-18910614 | 20130731
Length = 334
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 32 QTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSK-NFTFKCHRENNE----IYSVNSLN 86
Q RCV++ P +GF VGS++GRV + + + + +TF+CH ++ + + SVN++
Sbjct: 185 QLRCVSSIPYAEGFAVGSVDGRVALQVSNSSNSNDIGYTFRCHPKSKDGQHHLASVNNIA 244
Query: 87 FHPVHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYAVCYDWS 145
F P+ F T +G WD S++RL R S + ++N+ G + A A Y +
Sbjct: 245 FSPLMSGAFVTGDDEGYATIWDARSRKRLIEFPRYSNSVASLSYNHSGQLLAVASSYTFQ 304
Query: 146 KGAENHNPATAKTNIFLH 163
+ E P +F+H
Sbjct: 305 EAKEIVEPP----QVFIH 318