Miyakogusa Predicted Gene

Lj0g3v0253859.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253859.1 Non Characterized Hit- tr|B3S8W0|B3S8W0_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,24.84,3e-18,seg,NULL; no description,NULL;
Syntaxin-18_N,SNARE-complex protein Syntaxin-18 N-terminal; t-snare
p,CUFF.16664.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g084580.1 | syntaxin-81 protein | HC | chr6:31694227-31701...   540   e-153

>Medtr6g084580.1 | syntaxin-81 protein | HC | chr6:31694227-31701424
           | 20130731
          Length = 309

 Score =  540 bits (1390), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/309 (85%), Positives = 275/309 (88%)

Query: 1   MAKARDRTEDFKDAVRHSARSLGYDEAKLASIFASFIIHKPPQRSPFYKAALKTLESIGE 60
           MAKARDRTEDFKDAVR SARSLGYDEAKLASI ASFIIHKPPQRSPF KAA KTLESIGE
Sbjct: 1   MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFTKAAFKTLESIGE 60

Query: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLG 120
           L+ FLLKHRKDYTDLHRTTE ERDSIEQEVSAFIKTCQEQIDVLKNSINNEEE SKGWLG
Sbjct: 61  LDHFLLKHRKDYTDLHRTTEHERDSIEQEVSAFIKTCQEQIDVLKNSINNEEENSKGWLG 120

Query: 121 IATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLNRVTRKN 180
           I TAKANADTIAHKHGVVLILSERLH VTAQFDQLRA+RFQDAINRA PRRKLNR+T+K+
Sbjct: 121 ITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRITKKD 180

Query: 181 TTETSESGDMELREPDELRSEPLRVQQQLLDDETRALQVELTNLLDTVQETETKMVEMSA 240
           +TETS SGD+ELREPDELRSEP+RVQQQLLDDETRALQVEL++LLDTVQETETKMVEMSA
Sbjct: 181 STETSNSGDVELREPDELRSEPIRVQQQLLDDETRALQVELSSLLDTVQETETKMVEMSA 240

Query: 241 LNHLMSTHVLQQAHQIEHLYEQAVEATKNVEFGNKELSQAIQRNXXXXXXXXXXXXXXXX 300
           LNHLM+THVLQQA QIEHLY+QAVEATKNVE GNKELSQAIQRN                
Sbjct: 241 LNHLMATHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLFVLTF 300

Query: 301 XXXXXDWYS 309
                DWYS
Sbjct: 301 SIIFLDWYS 309