Miyakogusa Predicted Gene

Lj0g3v0253839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253839.1 Non Characterized Hit- tr|I3SPD0|I3SPD0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.48,0,TRAPP,Transport protein particle (TRAPP) component;
Ligand-binding domain in the NO signalling and G,CUFF.16690.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g070070.1 | transporter particle (TRAPP) protein | HC | ch...   383   e-107

>Medtr3g070070.1 | transporter particle (TRAPP) protein | HC |
           chr3:31373166-31378426 | 20130731
          Length = 194

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/194 (96%), Positives = 189/194 (97%)

Query: 1   MIGVGKMKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60
           MIGVGK+KQY NVLDKPL KGK EVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY
Sbjct: 1   MIGVGKVKQYGNVLDKPLNKGKTEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180
           KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVPMEGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARLG 194
           KFAEEVL REARLG
Sbjct: 181 KFAEEVLLREARLG 194