Miyakogusa Predicted Gene

Lj0g3v0253809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253809.1 Non Characterized Hit- tr|D8TQD6|D8TQD6_VOLCA
Putative uncharacterized protein OS=Volvox carteri GN=,27.36,5e-18,no
description,Armadillo-like helical; ARM repeat,Armadillo-type fold;
DUF2454,Protein of unknown fu,CUFF.16650.1
         (449 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g070010.1 | ARM repeat protein | HC | chr3:31338912-313336...   604   e-173

>Medtr3g070010.1 | ARM repeat protein | HC | chr3:31338912-31333667
           | 20130731
          Length = 447

 Score =  604 bits (1557), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/433 (69%), Positives = 352/433 (81%), Gaps = 6/433 (1%)

Query: 11  LNDLLVRLSKPISESLLTTPYTPHQGSNVSIKAFIKPLLSFRNPNIHSSIQDFXXXXXXX 70
           L + L+RLS  I+ SL  T YTP + + +S+KAF++PLL+  N     SI+DF       
Sbjct: 12  LQETLLRLSNSITSSLAATSYTPPKTATISVKAFLEPLLTPTN-----SIKDFALACALL 66

Query: 71  XXXXXXXXXXXXWIPNHLSSLATASFFEVSRAYLTVFDDRNSRFLAELGLIGDVVPPPEK 130
                       WIPNHLSSLA+ASFFE+S+ YLTVF++RN+  +AELGL  D+VPP EK
Sbjct: 67  SSSTLINSELLSWIPNHLSSLASASFFELSQIYLTVFNNRNTEKVAELGLDCDLVPP-EK 125

Query: 131 RLLLEMMPEVLPDLKDRIKESSIDKSDENNEFSAASARVPAVFAILAAFQFRWFVIQVDY 190
           RLL+E+ PE++P LK+RIKESS DKSDE +EFSAASARVP  FAILAA+QFRWFV QVDY
Sbjct: 126 RLLIELFPELVPILKERIKESSFDKSDEFDEFSAASARVPVGFAILAAYQFRWFVTQVDY 185

Query: 191 PHLGKLCGLVIPCALTAVDHWSPAVKGQGMITLTYLGRNVDAAELDRYKDVILDACCQNI 250
           PHLGKLCG VIPCALTAVDHWSP VKGQGM++  +LG+NVDAAEL  ++DVILDACCQNI
Sbjct: 186 PHLGKLCGWVIPCALTAVDHWSPEVKGQGMVSFAHLGKNVDAAELGGFEDVILDACCQNI 245

Query: 251 ASDDEIWHLVVEASVVLVTLTQKRNPRSPWFERMLNEMLSHLERQPRNKERRIAWLKSAD 310
           A+DDE+W  VVEAS+ L++LTQK NPRSPWFE+MLNEMLSHLERQPRNKERRIAWLKS D
Sbjct: 246 AADDEVWDCVVEASITLMSLTQKSNPRSPWFEKMLNEMLSHLERQPRNKERRIAWLKSVD 305

Query: 311 PLFNGVGLMLLAHFRRIFPLFFQWMHADDDDTVILVLKCTFILLRLTWIRKSPYVVRLVD 370
            L NGVGL+LLAHFRRIFPLFFQWMHADDDDT+ILVLKCT+++LRLTWIR SPYV RLVD
Sbjct: 306 SLLNGVGLVLLAHFRRIFPLFFQWMHADDDDTIILVLKCTYVVLRLTWIRNSPYVARLVD 365

Query: 371 ELVLVYKEAALRTAREGIRANTCQILILLQESKGMHFNVAWEKHRQDPDLTTLHLSLSRR 430
           +L LVYKEAALR ARE IRAN  QIL+LLQESKG HFN+AW+KH+ DPDLT L+LSLS  
Sbjct: 366 KLALVYKEAALRKAREEIRANITQILVLLQESKGQHFNLAWDKHQTDPDLTNLNLSLSGN 425

Query: 431 NNTNLDTLLSEKG 443
              NLD+L SE  
Sbjct: 426 YKCNLDSLPSENS 438