Miyakogusa Predicted Gene
- Lj0g3v0253729.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0253729.1 Non Characterized Hit- tr|B9RRM5|B9RRM5_RICCO
Spliceosome associated protein, putative OS=Ricinus
co,30.77,0.000002,seg,NULL; RRM,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; RNA recognition motif,RNA ,CUFF.16648.1
(289 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 333 1e-91
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 80 3e-15
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 79 5e-15
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 78 9e-15
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 78 1e-14
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 78 1e-14
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 77 2e-14
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 77 2e-14
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 75 1e-13
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 74 2e-13
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 73 4e-13
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 70 2e-12
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 70 3e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 67 1e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 64 1e-10
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 1e-10
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 64 2e-10
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 2e-10
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 2e-10
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 60 2e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 4e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 59 8e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 58 1e-08
Medtr6g048060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 57 1e-08
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 57 2e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 57 2e-08
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 57 2e-08
Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protei... 56 3e-08
Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protei... 56 3e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 55 7e-08
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 2e-07
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 54 2e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 51 1e-06
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 49 6e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 49 6e-06
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 162/166 (97%), Positives = 163/166 (98%)
Query: 1 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVL 120
PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVL
Sbjct: 148 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVL 207
Query: 121 AASNPTAQKSRPHTLFASGPPTLAGAPQANGTIAAPVPPRPFANGV 166
AASNPTAQKSRPHTLFASGPP+L APQANGTI APVPPRPFANGV
Sbjct: 208 AASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGV 253
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 9 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 68
+ N Q + A ++GNLDP + E+LL++ F G +V N + +D T +G
Sbjct: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVV-NVYVPKDRVTNQHQG 67
Query: 69 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 102
+GF+ + S E +D AI+ +N L + I V+ A
Sbjct: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
++G+ I+VN A + D + +F+G+L P+V + LY FSA+ ++ ++M D
Sbjct: 108 IFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSS-CSDARVMWDQ 166
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK-KDTKGERHGTPAERVL 120
TG SRGFGF+S+ + + + SAI + G++L +RQI ++A K + GE + ++ V+
Sbjct: 167 KTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVV 226
Query: 121 AASNPTAQKSRPHT 134
++ T+++++ T
Sbjct: 227 ELTSGTSEEAQEMT 240
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
L+G+PI+VN A + D N+F+G+L P+V + L+ FS + ++ ++M D
Sbjct: 124 LFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQS-CSDARVMWDQ 182
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG-----ERHGTPA 116
TG SRGFGF+S+ S + + SAI + G++L +RQI ++A TKG E+ + +
Sbjct: 183 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA----TKGAGGIEEKQNSDS 238
Query: 117 ERVLAASNPTAQKSR 131
+ V+ +N +++ +
Sbjct: 239 KSVVELTNGSSEDGK 253
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 3 KLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
+LYG+ ++VN A + D N+F+G+L P+V + L+ FS + ++ ++M D
Sbjct: 105 QLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVY-TTCSDARVMWD 163
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK 104
TG S+G+GF+S+ + + SAI M G++L NRQI ++A K
Sbjct: 164 HKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATK 207
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 3 KLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
+LYG+ ++VN A + D N+F+G+L P+V + L+ FS + ++ ++M D
Sbjct: 121 QLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVY-TTCSDARVMWD 179
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK 104
TG S+G+GF+S+ + + SAI M G++L NRQI ++A K
Sbjct: 180 HKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATK 223
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 3 KLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
+LYG+ ++VN A + D N+F+G+L P+V + L+ FS + ++ ++M D
Sbjct: 121 QLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVY-TTCSDARVMWD 179
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK 104
TG S+G+GF+S+ + + SAI M G++L NRQI ++A K
Sbjct: 180 HKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATK 223
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L KPIR+ + +D G+ N+FI NLD +D K L+DTF+AFG +++ K+ D +
Sbjct: 96 LNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLS-CKVALDGN 154
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 115
G S+G+GF+ +D+ EA+ SAI+ ++G + ++Q+ V + + + +G+P
Sbjct: 155 -GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSP 206
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANL++ NLD D +E+ L D FS FG VT+ ++M D G+S+G GF+++ + E ++ A
Sbjct: 312 GANLYLKNLDDDFNEEKLKDLFSEFGT-VTSCRVMLD-SHGHSKGSGFVAFSTPEEANKA 369
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
+ MNG+ + + + V+ A +K+ +
Sbjct: 370 LNEMNGKLVGRKPLFVAVAQRKEER 394
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L KPIR+ + +D G+ N+FI NLD +D K L+DTF+AFG +++ K+ D +
Sbjct: 96 LNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLS-CKVALDGN 154
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 115
G S+G+GF+ +D+ EA+ SAI+ ++G + ++Q+ V + + + +G+P
Sbjct: 155 -GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSP 206
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANL++ NLD D +E+ L D FS FG VT+ ++M D G+S+G GF+++ + E ++ A
Sbjct: 312 GANLYLKNLDDDFNEEKLKDLFSEFGT-VTSCRVMLD-SHGHSKGSGFVAFSTPEEANKA 369
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
+ MNG+ + + + V+ A +K+ +
Sbjct: 370 LNEMNGKLVGRKPLFVAVAQRKEER 394
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 4 LYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L +PIR+ + +D G N+FI NLD +D K L+DTFS+FG I++ K+ D
Sbjct: 100 LNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSC-KVAVD-G 157
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 114
+G S+G+GF+ +D+ EA+ AIE +NG L ++Q+ V +K ER T
Sbjct: 158 SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQ---EREST 206
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANL++ NLD + ++ L + FS++G I T+ K+MRDP+ G SRG GF+++ + E + A
Sbjct: 315 GANLYVKNLDDSIADEKLKELFSSYGTI-TSCKVMRDPN-GVSRGSGFVAFSTPEEASRA 372
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTKGER 111
+ MNG+ + ++ + V+ A +K+ + R
Sbjct: 373 LLEMNGKMVASKPLYVTLAQRKEDRRAR 400
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
N+F+ NL + L TF FG I T+ +MRD D G S+ FGF++++S + + A+E
Sbjct: 214 NVFVKNLSESTTDDELKKTFGEFGTI-TSAVVMRDGD-GKSKCFGFVNFESTDDAARAVE 271
Query: 86 AMNGQYLCNRQITVSYAYKKDTK 108
A+NG+ + +++ V A KK +
Sbjct: 272 ALNGKKIDDKEWYVGKAQKKSER 294
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
V +L++G+LD +V + LYD F+ G +V+ ++ RD T S G+G+++Y + + +
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVS-VRVCRDLTTRRSLGYGYVNYSNPQDAAR 90
Query: 83 AIEAMNGQYLCNRQITVSYAYK 104
A++ +N L NR I + Y+++
Sbjct: 91 ALDVLNFTPLNNRPIRIMYSHR 112
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L KPIR+ + +D GA N+FI NLD +D K LYDTFS FG I++ KI D
Sbjct: 90 LNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSC-KIAMDA- 147
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
+G S+G+GF+ +++ E++ SAI+ +NG L ++ + V + +K +
Sbjct: 148 SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDR 193
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 2 IKLYGKPIRVNKASQD--KKSLD--VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 57
+K Y + + + + + K+++D GANL++ NLD V ++ L + FS FG VT+ KI
Sbjct: 279 LKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGT-VTSCKI 337
Query: 58 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 111
+RDP G SRG GF+++ + E + A+ MNG+ + + + V+ A KK+ + R
Sbjct: 338 LRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKAR 390
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
+L++G+LD DV + LYD F+ G +V+ +I RD + S G+G++++ + + A++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVS-VRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 86 AMNGQYLCNRQITVSYAYK 104
+N L N+ I + Y+++
Sbjct: 84 VLNFTPLNNKPIRIMYSHR 102
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 7 KPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
K IRV + +D S G AN+FI NLD +D K L+DTFS+FG I++ KI D +G
Sbjct: 101 KSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSC-KIATD-GSGQ 158
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
S+G+GF+ +++ +++ +AI+ +NG + ++Q+ V + +K +
Sbjct: 159 SKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDR 201
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G NL++ NLD + ++ L + FS FG I T+ KIMRDP+ G SRG GF+++ + E + A
Sbjct: 314 GLNLYLKNLDDSITDEKLKEMFSEFGTI-TSYKIMRDPN-GVSRGSGFVAFSTPEEASRA 371
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTKGER 111
+ MNG+ + ++ + V+ A +K+ + R
Sbjct: 372 LGEMNGKMIVSKPLYVAVAQRKEDRRAR 399
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
N+++ NL E L + F A+G I T+ +MRD D G S+ FGF+++++ E + A+E
Sbjct: 212 NVYVKNLSESFTEDDLKNEFGAYGTI-TSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVE 269
Query: 86 AMNGQYLCNRQITVSYAYKK-----DTKGERHGTPAERVL 120
A+NG+ + +++ V A KK + KG T E V+
Sbjct: 270 ALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVV 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
V +L++G+L+ +V++ LYD F+ G +V+ ++ RD T S G+G++++ + + +
Sbjct: 30 VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS-VRVCRDLATRRSLGYGYVNFTNPQDAAR 88
Query: 83 AIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 114
A++ +N + N+ I V Y++ +D + GT
Sbjct: 89 ALDVLNFTPMNNKSIRVMYSH-RDPSSRKSGT 119
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
Query: 2 IKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
+ L GKPIR+ + +D G ANLFI NL+ +D K L++TFS FG +++ K+ D
Sbjct: 89 VPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLS-CKVAMD 147
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSY 101
+ G+S+G GF+ +D+ +++ +AIE ++G + ++++ V Y
Sbjct: 148 SN-GHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGY 187
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANL++ N+D ++E+ L + FS FG I T+ K+M D G S+G GF+++ + E + A
Sbjct: 303 GANLYLKNIDKSLNEEKLKELFSEFGTI-TSCKVMSDA-RGRSKGVGFVAFTTPEEASKA 360
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
I+ MNG+ + + + VS A +K+ +
Sbjct: 361 IDEMNGKIIGQKPVYVSVAQRKEER 385
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + DE L + FS +G ++ + +I+ D +TG SRGFGFI+++S E + SAI+A
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVL-DARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 87 MNGQYLCNRQITVSYAYKK 105
++GQ L R++ V+YA ++
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
AN+F+ NLD +D K+L+DTF+ FG +++ K+ D + G S G+GF+ YD+ E++ AI
Sbjct: 15 ANVFVKNLDTSIDNKVLHDTFATFGTVLS-CKVALDSN-GKSLGYGFVQYDNHESAKCAI 72
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGERHGTP 115
E ++G + +++ V Y ++ + E +G+P
Sbjct: 73 EKLDGMLIKDKKAFVGYFIRRQERSE-NGSP 102
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANL++ NLD ++++ L + FS FG I T+ K+M D G+S+GFGF+++ + E + A
Sbjct: 208 GANLYLKNLDESINDEKLKEMFSEFGTI-TSCKVMFDAH-GHSKGFGFVAFSTSEEASKA 265
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTKGER 111
I M+G+ + + + V A +K+ + R
Sbjct: 266 INGMSGKIIGQKPLYVVVAQRKEDRKTR 293
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LF+G + + DE+ L D FS +G ++ + +I+ D ++G S+GFGF++Y++ E + SAI+A
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVL-DARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 87 MNGQYLCNRQITVSYAYKK 105
++GQ L R++ V++A ++
Sbjct: 105 LDGQDLYGRRVGVNFANER 123
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LF+G + + DE+ L D FS +G ++ + +I+ D ++G S+GFGF++Y++ E + SAI+A
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVL-DARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 87 MNGQYLCNRQITVSYAYKK 105
++GQ L R++ V++A ++
Sbjct: 105 LDGQDLYGRRVGVNFANER 123
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LF+G L VDEK L D FS+FG VT +I+ D D+G +RGFGF+ + + +A+ SA +A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFG-DVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 87 MNGQYLCNRQITVSYAYKK 105
M+G+ L R + +++A +K
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L GK IRV S+D + G N+F+ NL +D L+D F +G I+++ KI R D
Sbjct: 81 LNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSS-KIARSED 139
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
G S+GFG+I +DS E+++ AI+ MNG + ++QI V +K +
Sbjct: 140 -GKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSER 184
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 6 GKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTG 64
GK IR K+ + LD NL++ NLDP V EK L + FS+FG IV+ ++ + G
Sbjct: 176 GKFIR--KSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLA--IKKDENG 231
Query: 65 NSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
S+GFGF++YDS + + A+EAM+G ++ + V+ A KK
Sbjct: 232 QSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK 272
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
+G+N+++ N+D V ++ L D FSA G +++ K+MRD D G S+GFGF+ + + +
Sbjct: 291 MGSNIYVKNIDTSVGDEELRDHFSACGEVLS-AKVMRD-DKGTSKGFGFVCFSTVVEAFK 348
Query: 83 AIEAMNGQYLCNRQITVSYAYKKDTK 108
++ NG + + V +A KK+ +
Sbjct: 349 SMSCFNGCMFHGKPLYVDFAQKKEDR 374
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ LFIG L +VD++ L D F+ +G +V +++ D +TG SRGFGF+++ S E++ SA+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVV-EARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 85 EAMNGQYLCNRQITVSYA 102
+M+GQ L R I VSYA
Sbjct: 95 -SMDGQDLNGRNIRVSYA 111
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A LFIG + DE L + FS +G ++ + KI+ D DTG SRGFGFI++ + E + SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVL-DAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 85 EAMNGQYLCNRQITVSYAYKK 105
+AM+ + L R + V+YA ++
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A LFIG + DE L + FS +G ++ + KI+ D DTG SRGFGFI++ + E + SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVL-DAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 85 EAMNGQYLCNRQITVSYAYKK 105
+AM+ + L R + V+YA ++
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 22 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 81
DV F+G L D + L FS +G IV + KI+ D +TG SRGFGF+++ + ++ +
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIV-DSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 82 SAIEAMNGQYLCNRQITVSYA 102
AIEAMNGQ L R ITV+ A
Sbjct: 62 DAIEAMNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 22 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 81
DV F+G L D + L FS +G IV + KI+ D +TG SRGFGF+++ + ++ +
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIV-DSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 82 SAIEAMNGQYLCNRQITVSYA 102
AIEAMNGQ L R ITV+ A
Sbjct: 62 DAIEAMNGQDLDGRNITVNQA 82
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
++F+G+L PDV + LL +TF V K++ DP+TG S+G+GF+ + + A+
Sbjct: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
Query: 86 AMNGQYLCNRQITVSYAYKKDTKG 109
MNG Y R + +S A K T G
Sbjct: 169 EMNGVYCSTRPMRISAATPKKTTG 192
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 20 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 79
S DV F+G L D + L FS FG I T+ K++ D +TG SRGFGF+++ ++
Sbjct: 3 SSDVEYRCFVGGLAWATDSQALEQAFSKFGEI-TDSKVINDRETGRSRGFGFVTFAEEKS 61
Query: 80 SDSAIEAMNGQYLCNRQITVSYA 102
AIE MNGQ + R ITV+ A
Sbjct: 62 MRDAIEEMNGQDIDGRNITVNEA 84
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
+L + + DE L + FS +G ++ + +I+ D +TG SRGFGFI+++S E + SAI+
Sbjct: 51 HLSVAGVSYSTDENSLREAFSRYGEVL-DARIIMDRETGRSRGFGFITFNSVEEASSAIQ 109
Query: 86 AMNGQYLCNRQITVSYAYKK 105
A++GQ L R++ V+YA ++
Sbjct: 110 ALDGQDLHGRRVRVNYANER 129
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 7/108 (6%)
Query: 4 LYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
L GK IRV + +D +KS +G N+F+ NL +D L D F FG I+++ +M
Sbjct: 76 LNGKAIRVMWSRRDPDARKSC-IG-NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVM-- 131
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
+ G S+G+GF+ +++ E++++AIE +NG + ++QI V KK +
Sbjct: 132 SEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDR 179
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
NL++ NLD D+ E LL + FS+FG I++ + +D + G S+GFGF+++D+ E + A+E
Sbjct: 190 NLYMKNLDLDISETLLREKFSSFGKIIS-LAVAKDSN-GMSKGFGFVNFDNPEDAKRAME 247
Query: 86 AMNGQYLCNRQITVSYAYKK 105
MNG L ++ + V+ A KK
Sbjct: 248 TMNGLQLGSKILYVARAQKK 267
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G+N+++ N+D +V ++ L D FS G I T+ KIMRD D G S+GFGF+ + + E ++ A
Sbjct: 291 GSNIYVKNIDDNVSDEGLRDHFSVCGTI-TSAKIMRD-DKGISKGFGFVCFSTPEEANKA 348
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
+ + +G + + VS A +K+ +
Sbjct: 349 VNSFHGFMFHGKPLYVSLAQRKEDR 373
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANLFI ++ + ++ L + F FG +++ K+ D TG S+ FGF+SYDS EA+ SA
Sbjct: 348 GANLFIYHIPQEFGDQELANAFQPFGRVLSA-KVFVDKATGVSKCFGFVSYDSPEAAQSA 406
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
I MNG L +++ V +K+D K
Sbjct: 407 ISMMNGCQLGGKKLKVQ--HKRDNK 429
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 8 PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 67
P++V A + + L+ LFIG L ++ E + FS +G I + +I+R +
Sbjct: 89 PLQVKYADGELERLE--HKLFIGMLPKNISEVEVSALFSKYGTI-KDLQILRGSQQTSKV 145
Query: 68 GFGFISYDSFEASDSAIEAMNGQYLCNRQ---ITVSYAYKKDTKGERHGTPAERVLAASN 124
G F+ Y++ E + +A+EA+NG++ + V +A DT+ ER A++ + ++
Sbjct: 146 GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKERQARRAQKAQSQAS 202
Query: 125 PTAQKSRPHTLFASGP 140
S+ +LF + P
Sbjct: 203 NVGHDSQHPSLFGAMP 218
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 20 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 79
S DV F+G L D + L FS +G I+ + KI+ D +TG SRGFGF+++ ++
Sbjct: 3 SADVEYRCFVGGLAWATDSEALEKAFSQYGEII-DSKIINDRETGRSRGFGFVTFADEKS 61
Query: 80 SDSAIEAMNGQYLCNRQITVSYA 102
AIE MNGQ + R ITV+ A
Sbjct: 62 MRDAIEGMNGQDMDGRNITVNEA 84
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANLFI ++ + ++ L + F FG +++ K+ D TG S+ FGF+SYDS EA+ SA
Sbjct: 347 GANLFIYHIPQEFGDQELANAFQPFGRVLSA-KVFVDKATGVSKCFGFVSYDSPEAAQSA 405
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
I MNG L +++ V +K+D K
Sbjct: 406 ISMMNGCQLGGKKLKVQ--HKRDNK 428
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 18 KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSF 77
KK +D NL+IG L P +++ L F FG IV K+++D TG S+G+GF+ Y
Sbjct: 445 KKEID-DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMA-KVIKDRITGLSKGYGFVKYADI 502
Query: 78 EASDSAIEAMNGQYLCNRQITVSYAYK 104
+++AI AMNG L R I V A K
Sbjct: 503 TMANNAIVAMNGYRLEGRTIAVRVAGK 529
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFI L + +E +L DTF G I+ K++ + TG S+G+GF+ ++S A+ +A +
Sbjct: 35 LFIAGLSYNTNETVLRDTFEQHGQII-EVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 87 MNGQYLCNRQITVSYAYK 104
++GQ + R+I V YA+K
Sbjct: 94 LHGQIVDGRRIRVGYAHK 111
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 2 IKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 54
+L G+ + VNKA+ + ++ + G ++GNL DVD L FS G V +
Sbjct: 186 FELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGK-VES 244
Query: 55 PKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
+++ D +TG SRGFGF++ + + AI A++GQ R I V+ A ++
Sbjct: 245 AQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEER 295
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ LFIG L +VD++ L D F+ +G +V +++ D +TG SRGFGF+++ S E++ SA+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVV-EARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 85 EAMNGQY--LC 93
+M+GQ LC
Sbjct: 95 -SMDGQVVILC 104
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 7 KPIRVNKAS---QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
+ R+N A+ DK S +V ++F+G+L DV + +L++TFS+ V K++ D +
Sbjct: 168 QAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDAN 227
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAA 122
TG S+G+GF+ + A+ MNG Y +R + + A + + G + P +
Sbjct: 228 TGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ---PGGQSNGT 284
Query: 123 SNPTAQKSRPHTLFASG 139
S+ + S T+F G
Sbjct: 285 SSQSEADSTNTTIFVGG 301
>Medtr6g048060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:17334399-17331330 | 20130731
Length = 157
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI--MRDPDTGNSRGFGFISYDSFEASDSAI 84
L++GNLD + E L FS +G I++ + R P G RGF FI Y + E + A
Sbjct: 15 LYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAILAK 74
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASG 139
E M+G+ C+R + V A GER+ A + T S H L +G
Sbjct: 75 EKMHGRLACSRPLVVRLA------GERYALE-----KADSSTKAVSEGHKLHLTG 118
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G NL++ L P + ++ L FSA G +V + ++ DP T SRGFGF++ D+ E +D
Sbjct: 44 GNNLYVTGLSPRITKRELEKHFSAKGKVV-DVHLVVDPWTRESRGFGFVTMDTLEEADRC 102
Query: 84 IEAMNGQYLCNRQITVSYA 102
++ +N L R ITV A
Sbjct: 103 VKYLNRSVLEGRVITVEKA 121
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 7 KPIRVNKAS---QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
+ R+N A+ DK S +V ++F+G+L DV + +L++TFS+ V K++ D +
Sbjct: 168 QAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDAN 227
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 113
TG S+G+GF+ + A+ MNG Y +R + + A + + G + G
Sbjct: 228 TGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPG 278
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 6 GKPIRVNKAS----------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 55
G+ + VNKAS + ++ + +++ NL +VD L FS G IV+
Sbjct: 177 GRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVS-A 235
Query: 56 KIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 109
+++ D +TG SRGFGF++ + AI A++GQ L R I VS A + +G
Sbjct: 236 RVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRG 289
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A LF+GN DVD + L F G V +++ + T SRGFGF++ + E ++SA+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGT-VEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAV 167
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGER 111
E NG R + V+ A K ++ ER
Sbjct: 168 EKFNGYDYNGRSLVVNKASPKGSRPER 194
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 7 KPIRVNKAS----QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N A+ K+S +V ++F+G+L DV + +L +TFS V K++ D
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK-----GERHGTPA 116
+TG S+G+GF+ + A+ MNG + +R + + A + + G+ +GTP+
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPS 283
Query: 117 ERVLAASNPT 126
+ ++N T
Sbjct: 284 QSDTDSTNTT 293
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 7 KPIRVNKAS----QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N A+ K+S +V ++F+G+L DV + +L +TFS V K++ D
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK-----GERHGTPA 116
+TG S+G+GF+ + A+ MNG + +R + + A + + G+ +GTP+
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPS 283
Query: 117 ERVLAASNPT 126
+ ++N T
Sbjct: 284 QSDTDSTNTT 293
>Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI--MRDPDTGNSRGFGFISYDSFEASDSAI 84
L +GNLD + E L FS +G IV+ + R P G RGF FI Y + E + A
Sbjct: 15 LCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEEAILAR 74
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASG 139
E M+G+ C+R + V A GER+ A + T S H L +G
Sbjct: 75 EKMHGRLACSRPLVVRLA------GERYALE-----KADSSTKAVSEGHKLHLTG 118
>Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI--MRDPDTGNSRGFGFISYDSFEASDSAI 84
L +GNLD + E L FS +G IV+ + R P G RGF FI Y + E + A
Sbjct: 15 LCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEEAILAR 74
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASG 139
E M+G+ C+R + V A GER+ A + T S H L +G
Sbjct: 75 EKMHGRLACSRPLVVRLA------GERYALE-----KADSSTKAVSEGHKLHLTG 118
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A L++G + D+ L ++F+ +G ++ + +++ D + G S+GFGF+++ + E + +A+
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVL-DARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 85 EAMNGQYLCNRQITVSYAYKK 105
+AM+ Q L R + V+YA ++
Sbjct: 99 QAMDNQELHGRTVRVNYAQER 119
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
+ LF+G L EK L D FS +G +V K++ D + S+G+GF+++ S + ++
Sbjct: 30 IAFKLFVGGLSFHTTEKTLSDAFSNYGQVV-EAKVITDRISEKSKGYGFVTFASQDEAEK 88
Query: 83 AIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 118
AI MN + L R + V YA K DTK G P R
Sbjct: 89 AITEMNEKALNGRVVFVDYA-KPDTK-RSMGMPIAR 122
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++G L +V+E +L+ F FG I + K D T R FGF+++ E + +A++
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDI-KDVKTPLDQATQKHRSFGFVTFLEREDASAAMDN 70
Query: 87 MNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSR 131
M+G L R +TV+YA + KG G A+ + A ++ ++ +
Sbjct: 71 MDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQ 115
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
++F+G+L DV + +L +TF++ + K++ D +TG S+G+GF+ + A+
Sbjct: 215 SVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMT 274
Query: 86 AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAA 122
MNG Y +R + V A K T G ++ V+ A
Sbjct: 275 EMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLA 311
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 8 PIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 66
PI+V A +++ L V LF+G+L+ K + + FS +G I + +MRD D S
Sbjct: 161 PIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRI-EDVYLMRD-DQKQS 218
Query: 67 RGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYAYKKDTKGERHG 113
RG GF+ Y + + +AI A+NG Y C + + V +A D K R G
Sbjct: 219 RGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFA---DPKRPRQG 265
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
NLF+ L + L + F FG +V + +++ D +G S+GFGF+ Y + E + IE
Sbjct: 52 NLFVSGLSKRTTTETLREAFQKFGEVV-HARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 86 AMNGQYLCNRQITVSYAYKKDTKGE 110
M+G++L I YA + GE
Sbjct: 111 GMDGKFLEGWVIFAEYARPRPPPGE 135
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 3 KLYGKPIRVNKASQDKKSL----DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIM 58
+ G+ +RVN + + K + LF+GNL V + L F G +V +++
Sbjct: 178 EFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVV-GARVL 236
Query: 59 RDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
D +TG SRG+GF+SY + D+A+ M+ L R + VS A K
Sbjct: 237 FDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGK 283
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 12/89 (13%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS-- 82
ANLF+G + + L FS +G ++ + KI+RD +TG RGFGF+++ + E + +
Sbjct: 34 ANLFLGGISYNT----LRKHFSLYGKVL-DAKIIRDRETGRPRGFGFVTFATTEEASAAL 88
Query: 83 -----AIEAMNGQYLCNRQITVSYAYKKD 106
AI++M Q L R++ V+YA +K
Sbjct: 89 QTMSLAIKSMKNQDLYGRKVRVNYATEKS 117
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 20 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 79
S +G LF+ L ++ L FS FGV+ T ++ D +T +GFGF+SY S
Sbjct: 2 SQRIGTKLFVSRLSFYTTQQQLESLFSPFGVL-TEATLITDQNTQRPKGFGFVSYKSEIE 60
Query: 80 SDSAIEAMNGQYLCNRQITVSYAYKKDT 107
++ A +A+NG+ + R I V +A KD+
Sbjct: 61 AEKARKALNGRIVDGRLIFVEHAKPKDS 88
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A LF+GN DVD + L F G V +++ + T SRGFGF++ + E ++SA+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGT-VEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAV 167
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGER 111
E NG R + V+ A K ++ ER
Sbjct: 168 EKFNGYDYNGRSLVVNKASPKGSRPER 194
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 6 GKPIRVNKAS----------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 55
G+ + VNKAS + ++ + +++ NL +VD L FS G IV+
Sbjct: 177 GRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVS-A 235
Query: 56 KIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQ 90
+++ D +TG SRGFGF++ + AI A++GQ
Sbjct: 236 RVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G L P + E+ F A+G VT+ +M D +TG RGFGFI++D+ EA D +
Sbjct: 114 IFVGGLPPTLAEEKFRQYFEAYG-HVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 87 MNGQYLCNRQITVSYAYKKD 106
L +Q+ V A KD
Sbjct: 173 TF-HDLNGKQVEVKRALPKD 191
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G L P + E+ F A+G VT+ +M D +TG RGFGFI++D+ EA D +
Sbjct: 114 IFVGGLPPTLAEEKFRQYFEAYG-HVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 87 MNGQYLCNRQITVSYAYKKD 106
L +Q+ V A KD
Sbjct: 173 TF-HDLNGKQVEVKRALPKD 191
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G + +V E D F+ +G V + +IMRD T SRGFGF+++D+ EA D +
Sbjct: 135 IFVGGIPSNVTEDEFRDFFTRYGE-VKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 193
Query: 87 MNGQYLCNRQITVSYA 102
N Q+ + A
Sbjct: 194 GNKIEFAGTQVEIKKA 209
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
LFI L ++ L + FS FG ++ K++ D +G S+GF F+SY + E ++ A E
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLL-EAKVITDRGSGRSKGFAFVSYSTIEEAEKARE 94
Query: 86 AMNGQYL 92
MN ++L
Sbjct: 95 GMNAKFL 101
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 29 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMN 88
+GNL VD L F G ++ K++ D ++G SRGFGF+++ S + DSAI ++
Sbjct: 200 VGNLAWGVDNLALESLFGEQGQVL-EAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLD 258
Query: 89 GQYLCNRQITVSYA 102
G L R I VS A
Sbjct: 259 GADLNGRAIRVSPA 272
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 29 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMN 88
+GNL VD L F G ++ K++ D ++G SRGFGF+++ S + DSAI ++
Sbjct: 200 VGNLAWGVDNLALESLFGEQGQVL-EAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLD 258
Query: 89 GQYLCNRQITVSYA 102
G L R I VS A
Sbjct: 259 GADLNGRAIRVSPA 272
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 11 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
V K + +K +V F+G LD D E L FS GV VT ++M +P T ++GF
Sbjct: 204 VVKERRKRKEFEV----FVGGLDKDATEDDLRKVFSEVGV-VTEVRLMMNPQTKKNKGFA 258
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDT 107
F+ +++ E + A+ + + +Q V+ + DT
Sbjct: 259 FLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDT 295
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 11 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
V K + +K +V F+G LD D E L FS GV VT ++M +P T ++GF
Sbjct: 204 VVKERRKRKEFEV----FVGGLDKDATEDDLRKVFSEVGV-VTEVRLMMNPQTKKNKGFA 258
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDT 107
F+ +++ E + A+ + + +Q V+ + DT
Sbjct: 259 FLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDT 295
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 11 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
V K + +K +V F+G LD D E L FS GV VT ++M +P T ++GF
Sbjct: 205 VVKERRKRKEFEV----FVGGLDKDATEDDLRKVFSEVGV-VTEVRLMMNPQTKKNKGFA 259
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDT 107
F+ +++ E + A+ + + +Q V+ + DT
Sbjct: 260 FLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDT 296
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 11 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
V K + +K +V F+G LD D E L FS GV VT ++M +P T ++GF
Sbjct: 205 VVKERRKRKEFEV----FVGGLDKDATEDDLRKVFSEVGV-VTEVRLMMNPQTKKNKGFA 259
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDT 107
F+ +++ E + A+ + + +Q V+ + DT
Sbjct: 260 FLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDT 296