Miyakogusa Predicted Gene

Lj0g3v0253389.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253389.2 Non Characterized Hit- tr|I1NJ95|I1NJ95_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.49713
PE,42.4,0.000000000000005,seg,NULL,CUFF.16629.2
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g067150.1 | RabGAP/TBC domain protein | HC | chr1:28910918...   108   1e-24
Medtr1g067150.2 | RabGAP/TBC domain protein | HC | chr1:28910918...   108   1e-24
Medtr1g116310.1 | RabGAP/TBC domain protein | HC | chr1:52566606...    61   2e-10

>Medtr1g067150.1 | RabGAP/TBC domain protein | HC |
           chr1:28910918-28895825 | 20130731
          Length = 1166

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 15  RDSYGFALRPQYAQRYREYALIYKEEEDERSDKWRSFLNQVAKPTQPSSPEIKYTETLKA 74
           +DSYGF LRPQ+AQRYREY+LIYKEEEDERSDKWRSF+ QV K +Q SS E ++ ETLKA
Sbjct: 325 KDSYGFTLRPQFAQRYREYSLIYKEEEDERSDKWRSFIEQVDKSSQTSSSENEHKETLKA 384

Query: 75  ESNEVKEEVNLH 86
           ES+EVKEE + H
Sbjct: 385 ESSEVKEEGSPH 396


>Medtr1g067150.2 | RabGAP/TBC domain protein | HC |
           chr1:28910918-28895794 | 20130731
          Length = 1166

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 15  RDSYGFALRPQYAQRYREYALIYKEEEDERSDKWRSFLNQVAKPTQPSSPEIKYTETLKA 74
           +DSYGF LRPQ+AQRYREY+LIYKEEEDERSDKWRSF+ QV K +Q SS E ++ ETLKA
Sbjct: 325 KDSYGFTLRPQFAQRYREYSLIYKEEEDERSDKWRSFIEQVDKSSQTSSSENEHKETLKA 384

Query: 75  ESNEVKEEVNLH 86
           ES+EVKEE + H
Sbjct: 385 ESSEVKEEGSPH 396


>Medtr1g116310.1 | RabGAP/TBC domain protein | HC |
          chr1:52566606-52575082 | 20130731
          Length = 817

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 10 NFEPKRDSYGFALRPQYAQRYREYALIYKEEEDERSDKWRSFLNQVAKPTQPSSPEIKYT 69
           F+ KRD+YGF +RPQ+ QRYREYA IYKEEE+ER+++W+SFL++ A   +  S E+   
Sbjct: 16 TFDHKRDAYGFTVRPQHLQRYREYASIYKEEEEERAERWKSFLDRQA---ETESSELDTN 72

Query: 70 ETLKAESNEV 79
           TL  E  +V
Sbjct: 73 RTLVGEGEKV 82