Miyakogusa Predicted Gene
- Lj0g3v0253199.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0253199.1 Non Characterized Hit- tr|I1MMM9|I1MMM9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.21024 PE,82.66,0,no
description,UAS; Ubiquitin-like,NULL; UBA-like,UBA-like; UBX,UBX; no
description,NULL; Thioredoxi,CUFF.16627.1
(452 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g070760.1 | structural constituent of ribosome protein, pu... 739 0.0
Medtr4g006310.1 | UBX domain protein | HC | chr4:583355-586621 |... 316 2e-86
Medtr4g006220.3 | UBX domain protein | HC | chr4:541793-536075 |... 296 2e-80
Medtr4g006220.1 | UBX domain protein | HC | chr4:541756-536326 |... 296 4e-80
Medtr4g006220.2 | UBX domain protein | HC | chr4:541793-536075 |... 272 6e-73
Medtr4g011870.1 | structural constituent of ribosome protein | L... 271 1e-72
>Medtr8g070760.1 | structural constituent of ribosome protein,
putative | HC | chr8:29819639-29812173 | 20130731
Length = 461
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/462 (78%), Positives = 397/462 (85%), Gaps = 11/462 (2%)
Query: 1 MEGVLSAIEQQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGNEAGAVP--P 58
MEG++S +QQ++V+SFLEVAQGQTA TARQFLQATSWKLEEALQLFLIG+E GAVP
Sbjct: 1 MEGMVSPTDQQTLVTSFLEVAQGQTAATARQFLQATSWKLEEALQLFLIGSETGAVPVPA 60
Query: 59 PSSHTPPLENADSWTDHQTSSEPRKDAANESSGHNDGEDVRPPLPVIRETLYDDAMLFGA 118
P+S TPPLENAD W D SE R D AN+S N+G++VR PLPVIRETLYD+ +L+G
Sbjct: 61 PASFTPPLENADGWIDQSHLSETRTDTANQSGVVNEGDEVRAPLPVIRETLYDNVLLYGG 120
Query: 119 SRFGQRPQEPNALVAFRNFEEEMRRPGVWESDQGAASTPESSRDNLASLYRPPFHLMFNG 178
SR G PQEPN+L+AFRNFE+E RRPGVWE +QGAAST ESS+D LASLYRPPFHLMF G
Sbjct: 121 SRLGHLPQEPNSLIAFRNFEQETRRPGVWEPEQGAASTAESSQDTLASLYRPPFHLMFTG 180
Query: 179 SFDKAKGAASLQDKWLLVNIQSNKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTTE 238
SFDKAK AAS+QDKWL+VNIQS KEFSSHMLNRDTWANEAVSQTI TNFIFWQVYDDTTE
Sbjct: 181 SFDKAKSAASMQDKWLMVNIQSTKEFSSHMLNRDTWANEAVSQTIKTNFIFWQVYDDTTE 240
Query: 239 GKKVCTYYRLDSIPVVLIIDPITGQKMRSWSGMVQPESLLEGLLGFLDAGPKDHHTTLSH 298
GKKVCTYYRLDSIPVVLIIDPITGQKMR+W GMVQP+SLLEGLL F DAGPKDHH TLSH
Sbjct: 241 GKKVCTYYRLDSIPVVLIIDPITGQKMRAWGGMVQPDSLLEGLLPFFDAGPKDHHNTLSH 300
Query: 299 KRPRGSTSPPKAKVIVDE--SKEEDEEVQRALAASLEG------MTGGDNIDVDVAVNQQ 350
KRPRGS+SPPK K +D +KEEDEEVQRALAASLE M GD+ + +VA N Q
Sbjct: 301 KRPRGSSSPPKPKATLDSDANKEEDEEVQRALAASLESVKESSEMAEGDDKEANVAGNVQ 360
Query: 351 EAALPKRPTYPTLPEEPKVERNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGE 410
E ALP RP YPTLPEEPK ERNLLCRVGVRLPDGRRVQRNFLRS+PIQLLWSFI+ QLGE
Sbjct: 361 ETALP-RPAYPTLPEEPKAERNLLCRVGVRLPDGRRVQRNFLRSEPIQLLWSFIAVQLGE 419
Query: 411 DETKLFRLTQAIPGASKNLDYESNSTFEESGLANSMISVTWD 452
DETK F+LT AIPGA+KNLDYESNSTFEESGLA SMISVTWD
Sbjct: 420 DETKPFKLTHAIPGATKNLDYESNSTFEESGLAYSMISVTWD 461
>Medtr4g006310.1 | UBX domain protein | HC | chr4:583355-586621 |
20130731
Length = 286
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 197/361 (54%), Positives = 224/361 (62%), Gaps = 96/361 (26%)
Query: 1 MEGVLSAI--EQQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGNEAGAVPP 58
MEG+ + +++++VS FLE+A+GQTA TA+ FLQATSW LEEAL+LFL G +
Sbjct: 1 MEGMTLSYPTDEETLVSYFLEIARGQTAATAKHFLQATSWNLEEALKLFLSGTK------ 54
Query: 59 PSSHTPPLENADSWTDHQTSSEPRKDAANESSGHNDGEDVRPPLPVIRETLYDDAMLFGA 118
PPL D AN+ D PLP+I+ETL
Sbjct: 55 -----PPL----------------MDTANQI-------DPSSPLPLIKETL--------- 77
Query: 119 SRFGQRPQEPNALVAFRNFEEEMRRPGVWESDQGAASTPESSRDNLASLYRPPFHLMFNG 178
ES+QGA+ST ES D LA LY PPFHLMFNG
Sbjct: 78 -----------------------------ESEQGASSTSES--DKLAYLYHPPFHLMFNG 106
Query: 179 SFDKAKGAASLQDKWLLVNIQSNKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTTE 238
SF KAK AAS+QDKWL+VNIQS KEFSS MLNRDTWAN+AVSQ ISTNFIFW VYDDTTE
Sbjct: 107 SFIKAKFAASMQDKWLIVNIQSTKEFSSLMLNRDTWANDAVSQIISTNFIFWLVYDDTTE 166
Query: 239 GKKVCTYYRLDSIPVVLIIDPITGQKMRSWSGMVQPESLLEGLLGFLDAGPKDHHTTLSH 298
G KVCT YRLD IPVVLIIDPITGQK+RSW GM+QPESL+EGLL FLDAG
Sbjct: 167 GHKVCTDYRLDLIPVVLIIDPITGQKIRSWGGMIQPESLIEGLLTFLDAG---------- 216
Query: 299 KRPRGSTSPPKAKVIV--DESKEEDEEVQRALAASLEG------MTGGDNIDVDVAVNQQ 350
PRGS+S PK K V + S+EEDEEVQR LAASLE MTGGDN D +VA N Q
Sbjct: 217 --PRGSSSRPKTKATVDSESSEEEDEEVQRKLAASLESVKESSEMTGGDNKDANVAGNLQ 274
Query: 351 E 351
E
Sbjct: 275 E 275
>Medtr4g006220.3 | UBX domain protein | HC | chr4:541793-536075 |
20130731
Length = 305
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/257 (63%), Positives = 188/257 (73%), Gaps = 20/257 (7%)
Query: 110 YDD-AMLFG--ASRFGQ-RPQEPNALVAFRNFEEEMRRPGVWESDQGAA-STPESSR-DN 163
YDD A+L SR G P++ N+L +E R VWE++ GA ST ESSR DN
Sbjct: 49 YDDQAILLSDRGSRLGHISPEKRNSLPYI--VQEPTR---VWETELGATTSTAESSRQDN 103
Query: 164 LASLYRPPFHLMFNGSFDKAKGAASLQDKWLLVNIQSNKEFSSHMLNRDTWANEAVSQTI 223
LASLYRPPFHL+F+GSF KAK AAS+QDKWLLVNIQS +EFSSHMLNRDTWAN+AVSQ I
Sbjct: 104 LASLYRPPFHLLFDGSFYKAKSAASMQDKWLLVNIQSTREFSSHMLNRDTWANDAVSQII 163
Query: 224 STNFIFWQVYDDTTEGKKVCTYYRLDSIPVVLIIDPITGQKMRSWSGMVQPESLLEGLLG 283
STNFIFWQV+DDT EG VC YRLDSIP VL+IDPITG+KM SW GMV+P+SLLEGLL
Sbjct: 164 STNFIFWQVFDDTYEGHDVCADYRLDSIPAVLVIDPITGKKMCSWDGMVEPQSLLEGLLT 223
Query: 284 FLDAGPKDHHTTLSHKRPRGSTSPPKAKVIVDESKEEDEEVQRALAASLEG------MTG 337
FLDAGP DHH TLSHK PR ++SP K+ D S+ DEEVQRAL AS + + G
Sbjct: 224 FLDAGPTDHHNTLSHKLPRRNSSPSKS---TDASEVGDEEVQRALEASFKSVKESSEIAG 280
Query: 338 GDNIDVDVAVNQQEAAL 354
GDN +VA N QE +
Sbjct: 281 GDNKYENVASNLQETTV 297
>Medtr4g006220.1 | UBX domain protein | HC | chr4:541756-536326 |
20130731
Length = 320
Score = 296 bits (757), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 165/269 (61%), Positives = 190/269 (70%), Gaps = 29/269 (10%)
Query: 110 YDD-AMLFG--ASRFGQ-RPQEPNALVAFRNFEEEMRRPGVWESDQGAA-STPESSR-DN 163
YDD A+L SR G P++ N+L +E R VWE++ GA ST ESSR DN
Sbjct: 49 YDDQAILLSDRGSRLGHISPEKRNSLPYI--VQEPTR---VWETELGATTSTAESSRQDN 103
Query: 164 LASLYRPPFHLMFNGSFDKAKGAASLQDKWLLVNIQSNKEFSSHMLNRDTWANEAVSQTI 223
LASLYRPPFHL+F+GSF KAK AAS+QDKWLLVNIQS +EFSSHMLNRDTWAN+AVSQ I
Sbjct: 104 LASLYRPPFHLLFDGSFYKAKSAASMQDKWLLVNIQSTREFSSHMLNRDTWANDAVSQII 163
Query: 224 STNFIFWQVYDDTTEGKKVCTYYRLDSIPVVLIIDPITGQKMRSWSGMVQPESLLEGLLG 283
STNFIFWQV+DDT EG VC YRLDSIP VL+IDPITG+KM SW GMV+P+SLLEGLL
Sbjct: 164 STNFIFWQVFDDTYEGHDVCADYRLDSIPAVLVIDPITGKKMCSWDGMVEPQSLLEGLLT 223
Query: 284 FLDAGPKDHHTTLSHKRPRGSTSPPKAKVIV------------DESKEEDEEVQRALAAS 331
FLDAGP DHH TLSHK PR ++SP K+ V V D S+ DEEVQRAL AS
Sbjct: 224 FLDAGPTDHHNTLSHKLPRRNSSPSKSTVNVNIFVDVTTTVDSDASEVGDEEVQRALEAS 283
Query: 332 LEG------MTGGDNIDVDVAVNQQEAAL 354
+ + GGDN +VA N QE +
Sbjct: 284 FKSVKESSEIAGGDNKYENVASNLQETTV 312
>Medtr4g006220.2 | UBX domain protein | HC | chr4:541793-536075 |
20130731
Length = 259
Score = 272 bits (695), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 142/207 (68%), Positives = 162/207 (78%), Gaps = 11/207 (5%)
Query: 110 YDD-AMLFG--ASRFGQ-RPQEPNALVAFRNFEEEMRRPGVWESDQGAA-STPESSR-DN 163
YDD A+L SR G P++ N+L +E R VWE++ GA ST ESSR DN
Sbjct: 49 YDDQAILLSDRGSRLGHISPEKRNSLPYI--VQEPTR---VWETELGATTSTAESSRQDN 103
Query: 164 LASLYRPPFHLMFNGSFDKAKGAASLQDKWLLVNIQSNKEFSSHMLNRDTWANEAVSQTI 223
LASLYRPPFHL+F+GSF KAK AAS+QDKWLLVNIQS +EFSSHMLNRDTWAN+AVSQ I
Sbjct: 104 LASLYRPPFHLLFDGSFYKAKSAASMQDKWLLVNIQSTREFSSHMLNRDTWANDAVSQII 163
Query: 224 STNFIFWQVYDDTTEGKKVCTYYRLDSIPVVLIIDPITGQKMRSWSGMVQPESLLEGLLG 283
STNFIFWQV+DDT EG VC YRLDSIP VL+IDPITG+KM SW GMV+P+SLLEGLL
Sbjct: 164 STNFIFWQVFDDTYEGHDVCADYRLDSIPAVLVIDPITGKKMCSWDGMVEPQSLLEGLLT 223
Query: 284 FLDAGPKDHHTTLSHKRPRGSTSPPKA 310
FLDAGP DHH TLSHK PR ++SP K+
Sbjct: 224 FLDAGPTDHHNTLSHKLPRRNSSPSKS 250
>Medtr4g011870.1 | structural constituent of ribosome protein | LC |
chr4:3029510-3027818 | 20130731
Length = 321
Score = 271 bits (693), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/202 (64%), Positives = 153/202 (75%), Gaps = 3/202 (1%)
Query: 110 YDDAMLFGASRFGQRPQEPNALVAFRNFEEEMRRPGVWESDQGAA---STPESSRDNLAS 166
YDD+++ G + E + F+ RR V ESD GAA +T + DNLAS
Sbjct: 49 YDDSIMCGDDDAPETVAEQEEPIKFKKETTTTRRRSVCESDLGAAAASTTVAETEDNLAS 108
Query: 167 LYRPPFHLMFNGSFDKAKGAASLQDKWLLVNIQSNKEFSSHMLNRDTWANEAVSQTISTN 226
LYRPP HLMFN SF KAK AAS+Q+KWLLVNIQS KEF+S MLNRDTW N+AVSQ I+TN
Sbjct: 109 LYRPPTHLMFNASFKKAKCAASMQNKWLLVNIQSTKEFNSLMLNRDTWTNDAVSQIITTN 168
Query: 227 FIFWQVYDDTTEGKKVCTYYRLDSIPVVLIIDPITGQKMRSWSGMVQPESLLEGLLGFLD 286
FIF QVYDDTT+GKK+CTYY+L+SIPVVLII PITGQ M SW G+VQP++LLEGLL FLD
Sbjct: 169 FIFLQVYDDTTKGKKLCTYYKLNSIPVVLIIHPITGQNMHSWEGLVQPQTLLEGLLTFLD 228
Query: 287 AGPKDHHTTLSHKRPRGSTSPP 308
A PKDHH TLSHK P G+++PP
Sbjct: 229 ATPKDHHNTLSHKSPPGTSTPP 250
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 47/55 (85%)
Query: 398 QLLWSFISAQLGEDETKLFRLTQAIPGASKNLDYESNSTFEESGLANSMISVTWD 452
QLLWSFI+ QL EDETK F+LT I GASKNLDY SN+TFEESGLA SMISVTWD
Sbjct: 267 QLLWSFIAVQLKEDETKPFKLTHEIHGASKNLDYRSNATFEESGLAGSMISVTWD 321
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 4 VLSAIEQQSMVSSFLEVAQGQTADTARQFLQATSWKLEEALQLFLIGN 51
+LS+ E+ S VS FLE+A+G TA TA+ FL++TSW +EEAL+ +L G+
Sbjct: 2 MLSSSEKTS-VSIFLEIARGATAATAKHFLESTSWNVEEALEWYLSGD 48