Miyakogusa Predicted Gene
- Lj0g3v0252719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0252719.1 Non Characterized Hit- tr|D8RVD9|D8RVD9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.06,0.00000000000003,ZF_RING_2,Zinc finger, RING-type;
ZF_RING_1,Zinc finger, RING-type, conserved site; no
description,Z,CUFF.16594.1
(313 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g016895.2 | zinc finger, C3HC4 type (RING finger) protein,... 313 1e-85
Medtr6g016895.1 | zinc finger, C3HC4 type (RING finger) protein,... 308 4e-84
Medtr7g112410.1 | poxvirus Ag35 surface protein | HC | chr7:4619... 54 3e-07
Medtr7g112410.2 | poxvirus Ag35 surface protein | HC | chr7:4619... 54 3e-07
>Medtr6g016895.2 | zinc finger, C3HC4 type (RING finger) protein,
putative | HC | chr6:6583491-6578659 | 20130731
Length = 462
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/324 (53%), Positives = 207/324 (63%), Gaps = 16/324 (4%)
Query: 1 MKKCEETSLHSSRRLKKVKRNISCDNEVSTAAGPSRKERKFVKKVVNEMVSDPVIXXXXX 60
+K+ E+S + R +K KRN N+VST S K R+ VK E+ P+I
Sbjct: 144 LKQHGESSSYPPRLSRKGKRNRG--NDVSTTGRHSHKGRRVVKND-GEVTFAPIILDLST 200
Query: 61 XXXXXXXXXXXXHTEAAATSSLSGCVDVNDLQENSSGPDARLCNQNRAMNGSSDGIEQIT 120
TEAA TS+LS V+++++QENS G DA L +Q+R + GSSDGIEQ
Sbjct: 201 DDQLCEIDRQ--DTEAAVTSTLSRHVNIDNIQENSEGLDAGLSSQSRTIGGSSDGIEQSR 258
Query: 121 DSNQI----------EDPQPVEQTSIDLCSSAG-KFIDGDQVDNVAGSPTSNEWSCVICF 169
DSN I EDP P+ QTS+DLCSSA KF DGD VDN SPTSNE SCVIC+
Sbjct: 259 DSNHISTLRNSTLFIEDPLPLTQTSVDLCSSAAEKFSDGDVVDNFDDSPTSNELSCVICW 318
Query: 170 EDFSSTLGVLPCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHPATADKKL 229
DFSST G+L C H FC +CIQ W R +MGK+S CPLCKAS EH T D+K
Sbjct: 319 TDFSSTRGILECGHRFCFSCIQGWVDCRKAMGKVSNCPLCKASIMKIMKVEHADTTDQKA 378
Query: 230 NSQTVPCDNLASVTYIPMDQELPDNSFEDGACVVCRTRGPDDLIETCNVCWTRRIHSYCM 289
SQT+PCD +S +IP+DQE PDNS E GACV+C R P+DL+E C+VC RRIHSYCM
Sbjct: 379 YSQTIPCDYTSSDVFIPIDQEFPDNSLEAGACVICGGREPEDLLENCDVCRCRRIHSYCM 438
Query: 290 DPPTYPWTCTHCKELRMLYRNQSY 313
DPP PWTCT CKELRMLYRN+ Y
Sbjct: 439 DPPLRPWTCTSCKELRMLYRNRLY 462
>Medtr6g016895.1 | zinc finger, C3HC4 type (RING finger) protein,
putative | HC | chr6:6583310-6579005 | 20130731
Length = 465
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 172/327 (52%), Positives = 207/327 (63%), Gaps = 19/327 (5%)
Query: 1 MKKCEETSLHSSRRLKKVKRNISCDNEVSTAAGPSRKERKFVKKVVNEMVSDPVIXXXXX 60
+K+ E+S + R +K KRN N+VST S K R+ VK E+ P+I
Sbjct: 144 LKQHGESSSYPPRLSRKGKRNRG--NDVSTTGRHSHKGRRVVKND-GEVTFAPIILDLST 200
Query: 61 XXXXXXXXXXXXHTEAAATSSLSGCVDVNDLQENSSGPDARLCNQNRAMNGSSDGIEQIT 120
TEAA TS+LS V+++++QENS G DA L +Q+R + GSSDGIEQ
Sbjct: 201 DDQLCEIDRQ--DTEAAVTSTLSRHVNIDNIQENSEGLDAGLSSQSRTIGGSSDGIEQSR 258
Query: 121 DSNQI----------EDPQPVEQTSIDLCSSAG-KFIDGDQVDNVAGSPTSNEWSCVICF 169
DSN I EDP P+ QTS+DLCSSA KF DGD VDN SPTSNE SCVIC+
Sbjct: 259 DSNHISTLRNSTLFIEDPLPLTQTSVDLCSSAAEKFSDGDVVDNFDDSPTSNELSCVICW 318
Query: 170 EDFSSTLGVLPCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHPATADKKL 229
DFSST G+L C H FC +CIQ W R +MGK+S CPLCKAS EH T D+K
Sbjct: 319 TDFSSTRGILECGHRFCFSCIQGWVDCRKAMGKVSNCPLCKASIMKIMKVEHADTTDQKA 378
Query: 230 NSQTVPCDNLASVTYIPMDQELPDNSFED---GACVVCRTRGPDDLIETCNVCWTRRIHS 286
SQT+PCD +S +IP+DQE PDNS E GACV+C R P+DL+E C+VC RRIHS
Sbjct: 379 YSQTIPCDYTSSDVFIPIDQEFPDNSLESSQAGACVICGGREPEDLLENCDVCRCRRIHS 438
Query: 287 YCMDPPTYPWTCTHCKELRMLYRNQSY 313
YCMDPP PWTCT CKELRMLYRN+ Y
Sbjct: 439 YCMDPPLRPWTCTSCKELRMLYRNRLY 465
>Medtr7g112410.1 | poxvirus Ag35 surface protein | HC |
chr7:46190529-46186663 | 20130731
Length = 904
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 115 GIEQITDSNQIEDPQPVEQTSIDLCSSAGKFIDGDQVDNVAGSPTSNEWSCVICF--EDF 172
G E+I +S + + VE DL S GK + C IC E+
Sbjct: 398 GKEKIEESQGRKGKEKVE----DLKSEVGKQV------------------CGICLSEENK 435
Query: 173 SSTLGVL-PCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHPATADKKLNS 231
GVL C H FC CI W+ S CPLCK F TA++ +
Sbjct: 436 RRVRGVLNSCTHYFCFACIMEWSKVE------SRCPLCKQRFQTISKPARSTTAEEAV-I 488
Query: 232 QTVPCDNLASVTYIPMDQELPD--NSFEDGACVVCRTRGPDDLIETCNVCWTRRIHSYCM 289
Q D + Y P ++EL + +E C C G D L+ C++C + H+YC+
Sbjct: 489 QVPERDQV----YQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDS-PAHTYCV 543
Query: 290 ----DPPTYPWTCTHCKELRMLYRN 310
+ P W C C+ + + N
Sbjct: 544 GLGREVPEGNWYCDGCRPVALASLN 568
>Medtr7g112410.2 | poxvirus Ag35 surface protein | HC |
chr7:46190529-46186663 | 20130731
Length = 865
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 115 GIEQITDSNQIEDPQPVEQTSIDLCSSAGKFIDGDQVDNVAGSPTSNEWSCVICF--EDF 172
G E+I +S + + VE DL S GK + C IC E+
Sbjct: 398 GKEKIEESQGRKGKEKVE----DLKSEVGKQV------------------CGICLSEENK 435
Query: 173 SSTLGVL-PCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHPATADKKLNS 231
GVL C H FC CI W+ S CPLCK F TA++ +
Sbjct: 436 RRVRGVLNSCTHYFCFACIMEWSKVE------SRCPLCKQRFQTISKPARSTTAEEAV-I 488
Query: 232 QTVPCDNLASVTYIPMDQELPD--NSFEDGACVVCRTRGPDDLIETCNVCWTRRIHSYCM 289
Q D + Y P ++EL + +E C C G D L+ C++C + H+YC+
Sbjct: 489 QVPERDQV----YQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDS-PAHTYCV 543
Query: 290 ----DPPTYPWTCTHCKELRMLYRN 310
+ P W C C+ + + N
Sbjct: 544 GLGREVPEGNWYCDGCRPVALASLN 568