Miyakogusa Predicted Gene

Lj0g3v0252619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252619.1 CUFF.16577.1
         (127 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g050428.1 | urease accessory protein UreD | HC | chr1:1939...   201   1e-52

>Medtr1g050428.1 | urease accessory protein UreD | HC |
           chr1:19390714-19387259 | 20130731
          Length = 302

 Score =  201 bits (512), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 108/120 (90%)

Query: 8   MLLEKEKIGCIKNHMQDYQVIAMIVLLGPNMQYIQKLVQDNVKRIMSEKLQHPSAALNHQ 67
           MLLEK+K G +K HMQDYQVIAMIVLLGP MQYIQ +VQDNVKRIMSE+L +PSAAL+HQ
Sbjct: 183 MLLEKDKFGRVKEHMQDYQVIAMIVLLGPKMQYIQNIVQDNVKRIMSEQLHNPSAALSHQ 242

Query: 68  RDKADHFMTKPNFMASCSVFGPKKIGLLVRVASVTTKSVYKFLQHQLAPLEPIIGVSPYR 127
           + KAD F TKP F+ASCSVFGPKKIGL+VRVASVTT+SVYKFL+HQLAPLE +IGV PYR
Sbjct: 243 KKKADFFTTKPTFVASCSVFGPKKIGLVVRVASVTTESVYKFLRHQLAPLEQMIGVPPYR 302