Miyakogusa Predicted Gene

Lj0g3v0252309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252309.1 Non Characterized Hit- tr|J3MCE6|J3MCE6_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB06G1,40.18,4e-19,no
description,Cupredoxin; Cu_bind_like,Plastocyanin-like;
PHYTOCYANIN,Plastocyanin-like; Cupredoxin,CUFF.16547.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g101260.1 | plastocyanin-like domain protein | HC | chr3:4...   206   8e-54
Medtr4g086740.1 | plastocyanin-like domain protein | HC | chr4:3...   115   2e-26
Medtr4g086750.1 | plastocyanin-like domain protein | HC | chr4:3...   115   2e-26
Medtr4g086730.1 | plastocyanin-like domain protein | HC | chr4:3...   114   2e-26
Medtr4g086710.1 | plastocyanin-like domain protein | HC | chr4:3...   114   3e-26
Medtr4g086690.1 | copper ion-binding protein, putative | HC | ch...    75   3e-14
Medtr2g079030.1 | MATE subfamily protein | LC | chr2:33094342-33...    50   8e-07

>Medtr3g101260.1 | plastocyanin-like domain protein | HC |
           chr3:46587432-46588034 | 20130731
          Length = 130

 Score =  206 bits (523), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 106/127 (83%)

Query: 20  LVIMSLAAGSDGRSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQS 79
           +V  S +     RSI VGDS GW AGTNYTQWA KNSPF INDTLVFKYP  GNST+  S
Sbjct: 1   MVAGSRSKARTKRSILVGDSEGWRAGTNYTQWAIKNSPFQINDTLVFKYPPTGNSTVVPS 60

Query: 80  VYMLPNLWSYTTCQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTK 139
           VY+LPN+WSYTTC+FRGAKLLGSA QG GEG+K+ELNQ +PYYFAS EGNAYDCIAGLTK
Sbjct: 61  VYLLPNMWSYTTCEFRGAKLLGSADQGGGEGIKIELNQLKPYYFASDEGNAYDCIAGLTK 120

Query: 140 FIAVPSS 146
           FIAVPS+
Sbjct: 121 FIAVPST 127


>Medtr4g086740.1 | plastocyanin-like domain protein | HC |
           chr4:34003801-34003089 | 20130731
          Length = 182

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 67/113 (59%)

Query: 32  RSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQSVYMLPNLWSYTT 91
           ++I VG S  W  G NY+ WA KN PF++NDTLVFKY  P  ++   SVYM P   S+  
Sbjct: 60  KNIIVGGSQNWHFGYNYSDWAIKNGPFYLNDTLVFKYDAPNATSFPHSVYMFPTWQSFMK 119

Query: 92  CQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFIAVP 144
           C  + AK++ +  QG GEG K  LN+ +PYYF+  E N   C  G  KF  +P
Sbjct: 120 CDVKKAKMVANHTQGVGEGFKFVLNKWKPYYFSCGEKNGLHCNVGQMKFTVMP 172


>Medtr4g086750.1 | plastocyanin-like domain protein | HC |
           chr4:34008307-34007418 | 20130731
          Length = 184

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 67/113 (59%)

Query: 32  RSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQSVYMLPNLWSYTT 91
           ++I VG S  W  G NY+ WA KN PF++NDTLVFKY  P  ++   SVYM P   S+  
Sbjct: 62  KNIIVGGSQNWHFGYNYSDWAIKNGPFYLNDTLVFKYDAPNATSFPHSVYMFPTWQSFMK 121

Query: 92  CQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFIAVP 144
           C  + AK++ +  QG GEG K  LN+ +PYYF+  E N   C  G  KF  +P
Sbjct: 122 CDVKKAKMVANHTQGVGEGFKFVLNKWKPYYFSCGEKNGLHCNVGQMKFAVMP 174


>Medtr4g086730.1 | plastocyanin-like domain protein | HC |
           chr4:34000379-33999721 | 20130731
          Length = 183

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 66/113 (58%)

Query: 32  RSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQSVYMLPNLWSYTT 91
           + I VG S  W  G NY+ WA KN PF++NDTLVFKY  P  ++   SVYM P   S+  
Sbjct: 61  KKIIVGGSQNWHFGYNYSDWAIKNGPFYLNDTLVFKYDAPNATSFPHSVYMFPTWQSFMK 120

Query: 92  CQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFIAVP 144
           C  + AK++ +  QG GEG K  LN+ +PYYF+  E N   C  G  KF  +P
Sbjct: 121 CDVKKAKMVANHTQGVGEGFKFVLNKWKPYYFSCGEKNGLHCNVGQMKFTVMP 173


>Medtr4g086710.1 | plastocyanin-like domain protein | HC |
           chr4:33995689-33994961 | 20130731
          Length = 183

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 66/113 (58%)

Query: 32  RSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQSVYMLPNLWSYTT 91
           + I VG S  W  G NY+ WA KN PF++NDTL+FKY  P  ++   SVYM P   S+  
Sbjct: 62  KKIIVGGSQNWHFGYNYSDWAIKNGPFYVNDTLIFKYDAPNATSFPHSVYMFPTWQSFMK 121

Query: 92  CQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFIAVP 144
           C  + AK++ +  QG GEG K  LN+ +PYYF+  E N   C  G  KF  +P
Sbjct: 122 CDVKKAKMVANHTQGVGEGFKFVLNKWKPYYFSCGEKNGLHCNVGQMKFAIMP 174


>Medtr4g086690.1 | copper ion-binding protein, putative | HC |
           chr4:33989528-33988983 | 20130731
          Length = 107

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 44/81 (54%)

Query: 64  LVFKYPLPGNSTIAQSVYMLPNLWSYTTCQFRGAKLLGSAAQGAGEGLKVELNQSRPYYF 123
           +VFKY  P   +   +VYM P   S+  C  + AK+L +  QG GEG K  LN+ +PYYF
Sbjct: 22  VVFKYDAPNAKSFPHNVYMFPTWQSFMKCDLKMAKMLANHTQGVGEGFKFVLNKWKPYYF 81

Query: 124 ASAEGNAYDCIAGLTKFIAVP 144
           A  E N   C  G  KF  +P
Sbjct: 82  ACGEKNRLHCNVGQMKFAIMP 102


>Medtr2g079030.1 | MATE subfamily protein | LC |
           chr2:33094342-33097785 | 20130731
          Length = 544

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 16/132 (12%)

Query: 14  QGVVIFLVIMSLAAGSDGRSITVGDSHGW--SAGTNYTQWATKNSPFHINDTLVFKYPLP 71
           + + +FL + SL + S   +  VG   GW  +   +Y+QW  +N  F +ND LVFKY   
Sbjct: 5   KHICLFLFLFSLISSSQAYTFYVGGKDGWVVNPSESYSQWTGRNR-FQVNDILVFKYKKD 63

Query: 72  GNSTIAQSVYMLPNLWSYTTCQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAY 131
            NS +        N   Y  C  +    +     G  E    +L++S P+YF S + +  
Sbjct: 64  SNSVLVV------NKEDYDKCNKKYP--IKKFDDGDSE---FQLDRSGPFYFISGKDD-- 110

Query: 132 DCIAGLTKFIAV 143
           +C  G    + V
Sbjct: 111 NCEKGQKLIVVV 122