Miyakogusa Predicted Gene
- Lj0g3v0250919.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0250919.1 Non Characterized Hit- tr|I1LBZ4|I1LBZ4_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.29,0,LEA_2,Late
embryogenesis abundant protein, LEA-14; seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.16431.1
(254 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g077560.1 | late embryogenesis abundant hydroxyproline-ric... 272 2e-73
Medtr5g076170.1 | late embryogenesis abundant hydroxyproline-ric... 149 2e-36
Medtr3g063310.1 | late embryogenesis abundant hydroxyproline-ric... 141 7e-34
Medtr5g087760.1 | late embryogenesis abundant hydroxyproline-ric... 84 1e-16
Medtr2g012550.1 | late embryogenesis abundant protein | LC | chr... 69 5e-12
Medtr3g078800.1 | late embryogenesis abundant hydroxyproline-ric... 65 5e-11
Medtr3g078810.1 | late embryogenesis abundant protein | LC | chr... 60 2e-09
Medtr2g090225.1 | late embryogenesis abundant protein | LC | chr... 57 2e-08
Medtr2g100060.1 | late embryogenesis abundant protein, putative ... 50 3e-06
>Medtr1g077560.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein | HC | chr1:34616049-34617274 | 20130731
Length = 250
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/254 (57%), Positives = 162/254 (63%), Gaps = 4/254 (1%)
Query: 1 MADPQRQRIHPVEVEARPPHPTAPLVPPGSFRSEKGNPVQVXXXXXXXXXXXXXXXXXXX 60
M+D QRQRIHP+ VE +P HP PLVPPGS RSEK V
Sbjct: 1 MSDHQRQRIHPMNVETKP-HPRTPLVPPGSSRSEK---VIHVPPPILHQHAMPAINSSKP 56
Query: 61 KRSYFCKCICWTXXXXXXXXXXXXXXXXXXXXXFKPKLPNYSVNSLRITDLRLNFDMSLY 120
K S FCKCICWT FKPKLPNYSV++LRI+DLRLNFD+SLY
Sbjct: 57 KISCFCKCICWTISLLFLLLIIIAATAGALYLIFKPKLPNYSVDTLRISDLRLNFDLSLY 116
Query: 121 AKFDVKITADNPNXXXXXXXXXXXXLSVWYTKTMLCEGSLPQFYQGHQNRTVLNVALTGQ 180
AKFDVKITA NPN LSV YT T LCEGSLP+FYQGHQN+TVLNV+LTGQ
Sbjct: 117 AKFDVKITATNPNKKIGIYYEKGGKLSVLYTNTKLCEGSLPKFYQGHQNKTVLNVSLTGQ 176
Query: 181 VQGGSTLMAALXXXXXTGRVPLDLNIHAPVAIXXXXXXXXXXXXXXXCQLVVDSLSSNNL 240
VQ G+TLMAAL TGR+PLDLNIHAP+AI CQLVVDSLSSNNL
Sbjct: 177 VQSGNTLMAALQQQQQTGRIPLDLNIHAPIAIKFGRLKLKKVKVLGRCQLVVDSLSSNNL 236
Query: 241 ISIKASNCKFRMKL 254
+SIKASNC F++KL
Sbjct: 237 VSIKASNCNFKLKL 250
>Medtr5g076170.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein, putative | HC | chr5:32436731-32437833 |
20130731
Length = 263
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 124/265 (46%), Gaps = 13/265 (4%)
Query: 1 MADPQRQRIHPV------EVEARPPHPTAPLVPPGSFRSEKGN----PVQVXXXXXXXXX 50
MAD QRIHP+ +VEA P+APLVP +S+ P
Sbjct: 1 MAD--NQRIHPLHDVPLHDVEAPQQQPSAPLVPRNMSKSDDPEQQHPPPPFPSTQQTLPI 58
Query: 51 XXXXXXXXXXKRSYFCKCICWTXXXXXXXXXXXXXXXXXXXXXFKPKLPNYSVNSLRITD 110
+RS CK CW F+PK+P YSV+ LR+T
Sbjct: 59 PINQSKPPKKRRSCCCKFFCWIFSILIILIIALGITIGILFLVFRPKIPKYSVDELRVTQ 118
Query: 111 LRLNFDMSLYAKFDVKITADNPNXXXXXXXXXXXXLSVWYTKTMLCEGSLPQFYQGHQNR 170
L+ + SL F++ ITA NPN +S WY T LCEGSLP+FYQGH+N
Sbjct: 119 FDLSNNNSLAVTFNLTITARNPNKKIGIDYRGGSRISAWYIDTKLCEGSLPKFYQGHKNV 178
Query: 171 TVLNVALTGQVQGGS-TLMAALXXXXXTGRVPLDLNIHAPVAIXXXXXXXXXXXXXXXCQ 229
TVL++ LTGQ Q + + G VPL LN+ PV I C
Sbjct: 179 TVLSIPLTGQTQNATGLSSSLQQQFQSEGSVPLKLNVKQPVRIKLGKLKLPKINFRVRCT 238
Query: 230 LVVDSLSSNNLISIKASNCKFRMKL 254
+VVDSLS+NN I I++S+CKFR +L
Sbjct: 239 IVVDSLSANNSIRIRSSSCKFRFRL 263
>Medtr3g063310.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein | HC | chr3:28678557-28679754 | 20130731
Length = 252
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 118/249 (47%), Gaps = 3/249 (1%)
Query: 7 QRIHPVEVEARPPHPTAPLVPPGSFRSEKGNPVQVXXXXXXXXXXXXXXXXXXXKRSYFC 66
QRIHP PT PL+P + +S++ +P KRS C
Sbjct: 6 QRIHPASDLESQTKPTVPLIPRNTSKSDRRSPS--YPPLPKRHFPVRHTHPPKKKRSCCC 63
Query: 67 KCICWTXXXXXXXXXXXXXXXXXXXXXFKPKLPNYSVNSLRITDLRLNFDMSLYAKFDVK 126
+ C T F+PKLP YSV+ LRIT L+ D SL+ F+V
Sbjct: 64 RFFCCTFTILLILIIAIGITVGALYLAFRPKLPKYSVDRLRITQFNLSDDNSLFVTFNVT 123
Query: 127 ITADNPNXXXXXXXXXXXXLSVWYTKTMLCEGSLPQFYQGHQNRTVLNVALTGQVQGGST 186
+TA NPN +S WY +T LCEGSLP+FYQGH+N TVLN+ LTGQ Q +
Sbjct: 124 VTARNPNKKIGIYYVSGSHISAWYKETGLCEGSLPKFYQGHRNTTVLNLPLTGQTQDATG 183
Query: 187 LMAALXXX-XXTGRVPLDLNIHAPVAIXXXXXXXXXXXXXXXCQLVVDSLSSNNLISIKA 245
L L G +PLD+ ++ V + C L VDSL ++N ISI
Sbjct: 184 LFNTLQQQLQEAGNIPLDIKVNQNVRVKLGKLKIFRVKFRVRCSLQVDSLGADNDISISD 243
Query: 246 SNCKFRMKL 254
S CKFR++L
Sbjct: 244 SRCKFRLRL 252
>Medtr5g087760.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein | HC | chr5:38059404-38058037 | 20130731
Length = 255
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 6/198 (3%)
Query: 61 KRSYFCKCICWTXXXXXXXXXXXXXXXXXXXXXFKPKLPNYSVNSLRITDLRLNFDMS-- 118
+R+ C C+CW F+PK PNY++ ++ I + + S
Sbjct: 59 RRNRHCCCLCWFIGIIFILIALLGIAAGIFYLVFRPKAPNYTIENITIRGINITSPSSTT 118
Query: 119 -LYAKFDVKITADNPNXXXXXXXXXXXXLSVWYTKTMLCEGSLPQFYQGHQNRTVLNVAL 177
+ +FDV + ADNPN ++Y LC G LP FYQ N TV L
Sbjct: 119 GISPEFDVTVKADNPNDKIGISYEKDSSAEIFYKDMRLCNGILPSFYQPSNNVTVFKTML 178
Query: 178 TGQ-VQGGSTLMAALXXXXXTGRVPLDLNIHAPVAIXXXXXXXXXXXXXXXCQLVVDSLS 236
G V+ S AL V L + + APV I C L+VD L+
Sbjct: 179 KGNGVKMSSEDQRALVKAQTKQEVQLMVKLRAPVKIKVGSVKTWKITVKVDCDLMVDKLT 238
Query: 237 SNNLISIKASNCKFRMKL 254
+N I + +C FR+ L
Sbjct: 239 ANA--KIVSRSCTFRVDL 254
>Medtr2g012550.1 | late embryogenesis abundant protein | LC |
chr2:3133124-3131208 | 20130731
Length = 265
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 6/193 (3%)
Query: 66 CKCICWTXXXXXXXXXXXXXXXXXXXXXFKPKLPNYSVNSLRITDLRLNF---DMSLYAK 122
C+C CW +PK YS+ + I + + + ++ K
Sbjct: 74 CRCFCWFMALTFLLIVLLGIATGTLYLILRPKALKYSIQDINIKGMNTTWPSSEATILPK 133
Query: 123 FDVKITADNPNXXXXXXXXXXXXLSVWYTKTMLCEGSLPQFYQGHQNRTVLNVALTGQVQ 182
FD+ + A NPN ++Y LC+G LP+FYQ N TVL L G
Sbjct: 134 FDLTVRASNPNDKIEIFYEKDNSAEIFYNNVKLCKGVLPEFYQPSNNVTVLKTVLEGIKL 193
Query: 183 GGSTLMAALXXXXXTGRVPLDLNIHAPVAIXXXXXXXXXXXXXXXCQLVVDSLSSNNLIS 242
G A + V L + + V I C + +D L N
Sbjct: 194 GREDQKALVEVQTEEQEVLLITKLRSYVKIKVGSVKTWKMAINVDCGVTLDGLRENP--E 251
Query: 243 IKASNC-KFRMKL 254
I +SNC KFR+ +
Sbjct: 252 IVSSNCDKFRVNI 264
>Medtr3g078800.1 | late embryogenesis abundant hydroxyproline-rich
glycoprotein, putative | HC | chr3:35573766-35574929 |
20130731
Length = 265
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Query: 95 KPKLPNYSVNSLRITDLRLNFDMSLYAKFDVKITADNPNXXXXXXXXXXXXLSVWYTKTM 154
+P+ P Y+++ + + + L ++ +FDV + ADN N + ++Y
Sbjct: 93 RPEAPKYAIDRVSVKGMNLTSLSTISPEFDVSVKADNGNKKIGIYYESDSSVEMFYRGVS 152
Query: 155 LCEGSLPQFYQGHQNRTVLNVALTGQ-VQGGSTLMAALXXXXXTGRVPLDLNIHAPVAIX 213
LC+G LP FYQ N TV L G ++ + AL G VPL L + APV I
Sbjct: 153 LCKGVLPAFYQPSNNVTVFQTVLKGNGIELVRSDQRALVNAVTKGSVPLTLKLRAPVKIK 212
Query: 214 XXXXXXX-XXXXXXXCQLVVDSLSSNNLISIKASNCKFRMKL 254
C L VD L++ I +C + L
Sbjct: 213 VGSVKKTWKVRVKVDCDLTVDQLTAQ--AKIVDRDCSYGFDL 252
>Medtr3g078810.1 | late embryogenesis abundant protein | LC |
chr3:35579705-35580151 | 20130731
Length = 148
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 118 SLYAKFDVKITADNPNXXXXXXXXXXXXLSVWYTKTMLCEGSLPQFYQGHQNRTVLNVAL 177
S+ +FDV I ADN N + ++Y LC G LP FYQ N TV + AL
Sbjct: 9 SISPEFDVSIKADNGNHKLGIYYENDSSVEIFYRDVSLCNGVLPAFYQPSNNMTVFHSAL 68
Query: 178 TG-QVQGGSTLMAALXXXXXTGRVPLDLNIHAPV 210
G V+ T AL RVPL N+ APV
Sbjct: 69 KGNDVELAETDRRALMNAVAKRRVPLTFNLRAPV 102
>Medtr2g090225.1 | late embryogenesis abundant protein | LC |
chr2:38314255-38314917 | 20130731
Length = 220
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 96 PKLPNYSVNSLRITDLRLNFDMSLYAKFDVKITADNPNXXXXXXXXXXXXLSVWYTKTML 155
PK+P Y++++L I D + + L+ +V + A NPN +S+ Y+ ++L
Sbjct: 62 PKVPTYNIDNLDIKDFNIKNGIKLHTNINVVLKATNPNKYIALDYLSNE-VSMAYSGSIL 120
Query: 156 CEGSLPQFYQGHQNRTVLNVALTGQVQGGSTLMAALXXXXXTGRVPLDLNIHAPVA-IXX 214
G P Q T LNV L G G T+ L G +PL + + P+ +
Sbjct: 121 SSGHFPPTLQHGHATTNLNVILKGDADFGPTMQLQLLKDQKMGYIPLLIMVKVPIQLVIA 180
Query: 215 XXXXXXXXXXXXXCQLVVDSLSSN 238
C +V+DSL N
Sbjct: 181 DFFHLKKFVVRVNCSMVIDSLEPN 204
>Medtr2g100060.1 | late embryogenesis abundant protein, putative |
HC | chr2:42954573-42953147 | 20130731
Length = 260
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 94 FKPKLPNYSVNSLRITDLRLNFDMSLYAKFDVKITADNPNXXXXXXXXXXXXLSVWYTKT 153
++P P+++V SL+++ L L +L +KF+V ITA NPN +++
Sbjct: 87 YRPHRPSFTVTSLKLSYLNLTSSSTLNSKFNVNITAKNPN-KHITFVYQPTTITILSNNI 145
Query: 154 MLCEGSLPQFYQGHQNRTVLNVALT 178
+ EG++P F G +N T+L +++
Sbjct: 146 NIGEGTIPSFKHGKKNTTLLKSSIS 170