Miyakogusa Predicted Gene

Lj0g3v0250909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250909.1 Non Characterized Hit- tr|D7KCT1|D7KCT1_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,74.58,6e-19,seg,NULL,CUFF.16430.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077550.1 | hypothetical protein | HC | chr1:34612897-3461...   116   4e-27

>Medtr1g077550.1 | hypothetical protein | HC |
           chr1:34612897-34615383 | 20130731
          Length = 130

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 62/71 (87%)

Query: 52  GTGNGVTAFFFNPAQDPIVQEALKEPVAFLGGMFAGILRLDLNEEPLKEWVTRTVEAAGV 111
           G  + +TAFFFNPAQDP+V+EA+KEPVAFLGG+FAGILRLDLNEEPLKEWV RTVEA+ +
Sbjct: 49  GNRSRITAFFFNPAQDPLVKEAVKEPVAFLGGIFAGILRLDLNEEPLKEWVMRTVEASDI 108

Query: 112 DEEETTTEGST 122
            EEET  E ST
Sbjct: 109 SEEETNAEEST 119