Miyakogusa Predicted Gene

Lj0g3v0250779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250779.1 Non Characterized Hit- tr|Q6BBR1|Q6BBR1_LOTJA
Putative uncharacterized protein Lj-CDC50 like 1
OS=Lo,99.26,0,seg,NULL; CDC50,Protein of unknown function DUF284,
transmembrane eukaryotic; SUBFAMILY NOT
NAMED,NU,NODE_29244_length_590_cov_128.584747.path2.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g067760.1 | LEM3 (ligand-effect modulator 3) family protei...   208   1e-54
Medtr2g067760.2 | LEM3 (ligand-effect modulator 3) family protei...   208   1e-54
Medtr2g101400.1 | LEM3 (ligand-effect modulator 3) family protei...   140   3e-34
Medtr2g451450.1 | LEM3 (ligand-effect modulator 3) family protei...   137   3e-33
Medtr7g086110.1 | LEM3 (ligand-effect modulator 3) family protei...   126   6e-30
Medtr2g451450.2 | LEM3 (ligand-effect modulator 3) family protei...    54   4e-08

>Medtr2g067760.1 | LEM3 (ligand-effect modulator 3) family protein |
           HC | chr2:28366151-28371165 | 20130731
          Length = 348

 Score =  208 bits (529), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 108/120 (90%), Gaps = 2/120 (1%)

Query: 18  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHR 77
           RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVF+PIGVASL+ASRKVVEIV+ 
Sbjct: 21  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLMASRKVVEIVYG 80

Query: 78  YESSCL-KGVDNKIAYIQS-SADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
           YES CL  G  ++IAYIQS   DKTC ITL V KHMKSPIYVYYQLDNFYQNHRRYVKSR
Sbjct: 81  YESDCLPDGTKDEIAYIQSPETDKTCNITLNVTKHMKSPIYVYYQLDNFYQNHRRYVKSR 140


>Medtr2g067760.2 | LEM3 (ligand-effect modulator 3) family protein |
           HC | chr2:28366151-28371165 | 20130731
          Length = 348

 Score =  208 bits (529), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 108/120 (90%), Gaps = 2/120 (1%)

Query: 18  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHR 77
           RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVF+PIGVASL+ASRKVVEIV+ 
Sbjct: 21  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLMASRKVVEIVYG 80

Query: 78  YESSCL-KGVDNKIAYIQS-SADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
           YES CL  G  ++IAYIQS   DKTC ITL V KHMKSPIYVYYQLDNFYQNHRRYVKSR
Sbjct: 81  YESDCLPDGTKDEIAYIQSPETDKTCNITLNVTKHMKSPIYVYYQLDNFYQNHRRYVKSR 140


>Medtr2g101400.1 | LEM3 (ligand-effect modulator 3) family protein |
           HC | chr2:43597997-43601669 | 20130731
          Length = 347

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 3/121 (2%)

Query: 18  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHR 77
           ++ +K+PKYSKF+QQELPA KPILTP  VI+ F  + ++F+PIG+ASL +S KVVE   R
Sbjct: 17  KKTSKKPKYSKFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFR 76

Query: 78  YESSCLKG--VDNKIAYIQS-SADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKS 134
           Y+ +CL      + +AYI+S + +KTC     V++ M++P+++YYQL+N+YQNHRRYVKS
Sbjct: 77  YDETCLSPDVAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLENYYQNHRRYVKS 136

Query: 135 R 135
           R
Sbjct: 137 R 137


>Medtr2g451450.1 | LEM3 (ligand-effect modulator 3) family protein |
           HC | chr2:22857320-22850942 | 20130731
          Length = 331

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 85/111 (76%), Gaps = 3/111 (2%)

Query: 28  KFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHRYESSCLKGV- 86
           +FTQQ LPACKP+LTP+AVI+ FLL+ +VF+P+G+ +L AS  VVEIV RY+  C+    
Sbjct: 30  QFTQQSLPACKPVLTPKAVIATFLLMGLVFIPVGLVTLRASYSVVEIVDRYDIDCVPEEY 89

Query: 87  -DNKIAYIQ-SSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
             NK+AY++  S  K C   LKV K M++PIY+YYQLDN+YQNHRRYVKSR
Sbjct: 90  RSNKVAYVKDDSISKNCSRFLKVPKSMRAPIYIYYQLDNYYQNHRRYVKSR 140


>Medtr7g086110.1 | LEM3 (ligand-effect modulator 3) family protein |
           HC | chr7:33402566-33400955 | 20130731
          Length = 326

 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 3/112 (2%)

Query: 27  SKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHRYESSCLKGV 86
           S+F+QQEL A +PILTP  VI+ F  + +VF+PIGVASL AS +VVE+  RY+  CL  +
Sbjct: 4   SRFSQQELHAWQPILTPGWVIAIFTFIGLVFIPIGVASLFASEQVVEVPLRYDDQCLPSL 63

Query: 87  --DNKIAYIQSS-ADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
             D+ + YI+ +   KTC   L V   MK+PIYVYYQL NFYQNHR YVKSR
Sbjct: 64  YKDDAMTYIKGNRISKTCTKKLTVKSKMKAPIYVYYQLSNFYQNHRHYVKSR 115


>Medtr2g451450.2 | LEM3 (ligand-effect modulator 3) family protein |
           HC | chr2:22853645-22850321 | 20130731
          Length = 233

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 25/25 (100%)

Query: 111 MKSPIYVYYQLDNFYQNHRRYVKSR 135
           M++PIY+YYQLDN+YQNHRRYVKSR
Sbjct: 1   MRAPIYIYYQLDNYYQNHRRYVKSR 25