Miyakogusa Predicted Gene

Lj0g3v0250649.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250649.1 tr|B9GNP6|B9GNP6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_551783 PE=4 SV=1,37.96,0.0000004,
,CUFF.16413.1
         (345 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g071340.1 | PHD zinc finger protein | HC | chr5:30255974-3...   122   4e-28
Medtr3g464550.1 | PHD zinc finger protein | HC | chr3:25940691-2...    72   1e-12

>Medtr5g071340.1 | PHD zinc finger protein | HC |
           chr5:30255974-30261989 | 20130731
          Length = 1144

 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 120/244 (49%), Gaps = 67/244 (27%)

Query: 102 NVLSSEIELSERPRENGDLSNLLCTDQVCGANPLEDDDKEILQPVEKVAPLQEILPESQK 161
           N   S+I +S++P EN D  NLL TDQ CG+                + PL +   E +K
Sbjct: 277 NAFGSDIGISDKPEENADSLNLLVTDQNCGST--------------SIIPLVD--EEFEK 320

Query: 162 ELCVHDAGEDISGANIGEQIQEISPETQIELSIHNAGEDISGANIGQQVQEISPQSQKEM 221
           E  +H+  E        ++ Q +  E + E+ +H   E                 S K  
Sbjct: 321 ENLLHEELE-------SDKSQMVDVEFEKEILLHEELE-----------------SDKNQ 356

Query: 222 SIDDLGEGISGAKIGEQIQENLPESEKEMSIHDAGEAIPVANNGKQSKKRRPRDSIVWRP 281
            +D                    E EK++ +H+  E+        +++KRR   SI+W+P
Sbjct: 357 MVD-------------------VEFEKDILLHEELES-------DKNRKRRRSKSIIWKP 390

Query: 282 LILSEPEFCPEVITQYALGSKSRKTRETLKTKVRKHLAFLGWTIEWTENKQFTDRRRYRY 341
           L LSE EFCPEVI +YALG +S+  RE LKTKVRKHL +LGWTIEWTEN      RRYRY
Sbjct: 391 LELSEVEFCPEVIDEYALGCRSKTVRELLKTKVRKHLVYLGWTIEWTENNT-PPHRRYRY 449

Query: 342 KSPE 345
           KSP+
Sbjct: 450 KSPD 453


>Medtr3g464550.1 | PHD zinc finger protein | HC |
           chr3:25940691-25947645 | 20130731
          Length = 1123

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 10/107 (9%)

Query: 241 ENLPESEKEMSIHDAGEAIPVANNGKQSKKRRPRD---SIVWRPLILSEPEFCPEVITQY 297
           ++LP+ + E+S + AGEA  VA N ++++ R   D   +  W  +I SE E+CP+ + QY
Sbjct: 260 KDLPKFQNEVSCNGAGEA--VAINFEKNEHRLSTDLKSNNQWESVIFSETEYCPDAVKQY 317

Query: 298 ALGSKSRKTRETLKTKVRKHLAFLGWTIEWTENKQFTDRRRYRYKSP 344
            L S  R T  +LK KV KHLA++GW I+ +        + YRY  P
Sbjct: 318 VLASDDRATMTSLKEKVWKHLAYIGWEIDIS-----LRNKHYRYTPP 359