Miyakogusa Predicted Gene

Lj0g3v0250599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250599.1 tr|B9HBK0|B9HBK0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560743 PE=4 SV=1,64.79,7e-17,GB
DEF: T22K18.10 PROTEIN (TAF12) (PUTATIVE TBP-ASSOCIATED 58 KDA SUBUNIT
PROTEIN),NULL; FAMILY NOT ,CUFF.16407.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060410.3 | transcription initiation factor TFIID subunit ...    85   2e-17
Medtr1g060410.1 | transcription initiation factor TFIID subunit ...    85   2e-17

>Medtr1g060410.3 | transcription initiation factor TFIID subunit 12
           | HC | chr1:26292079-26298871 | 20130731
          Length = 515

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%)

Query: 1   MTLPGFGGDEIKSYKRPVQSEIHKERLAAIKKSLLAAEAAHXXXXXXXXXXXXXXXXXXP 60
           +TLPGFGGDEIK+Y++P+ ++IHKERLAAIKKS++A EAAH                   
Sbjct: 443 ITLPGFGGDEIKNYRKPLSTDIHKERLAAIKKSMIATEAAHPKGSAGQASGSAKGSQAKI 502

Query: 61  PLNIIGSPNLKN 72
           P N++GSPNLKN
Sbjct: 503 PFNVLGSPNLKN 514


>Medtr1g060410.1 | transcription initiation factor TFIID subunit 12
           | HC | chr1:26292079-26298871 | 20130731
          Length = 515

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%)

Query: 1   MTLPGFGGDEIKSYKRPVQSEIHKERLAAIKKSLLAAEAAHXXXXXXXXXXXXXXXXXXP 60
           +TLPGFGGDEIK+Y++P+ ++IHKERLAAIKKS++A EAAH                   
Sbjct: 443 ITLPGFGGDEIKNYRKPLSTDIHKERLAAIKKSMIATEAAHPKGSAGQASGSAKGSQAKI 502

Query: 61  PLNIIGSPNLKN 72
           P N++GSPNLKN
Sbjct: 503 PFNVLGSPNLKN 514