Miyakogusa Predicted Gene

Lj0g3v0250469.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250469.2 tr|B9GQI3|B9GQI3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_756265 PE=4
SV=1,37.84,3e-17,seg,NULL; SNARE_assoc,SNARE associated Golgi
protein,CUFF.16395.2
         (376 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g057180.1 | transmembrane protein, putative | HC | chr7:20...   481   e-136

>Medtr7g057180.1 | transmembrane protein, putative | HC |
           chr7:20544719-20548610 | 20130731
          Length = 375

 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/378 (69%), Positives = 295/378 (78%), Gaps = 5/378 (1%)

Query: 1   MSVAPVLPRGYFLNLRTPSLRCGSPTPIT--HFCCFNVRRRLSANENVVVAHVSQLFGSR 58
           MS+ PV   G  LNL T +LR     P+T        + +RL A+ N    HVS LF SR
Sbjct: 1   MSLTPVFSCGPLLNLPTTNLRGFRTKPVTVRLLSSLALPQRLFAHWNTN-GHVSHLFRSR 59

Query: 59  IRCFKQEGAENFEAVKPKNIPEPDSQDSFVNEVQIKGKGGHNKTEISFLAMIAIALGIAV 118
           I+C K EG EN+EA+K K+I   D+QD F NEV+  GK  HNKTEI FLAMIAIALGIA 
Sbjct: 60  IKCSKHEGEENYEALKSKDIS--DTQDRFSNEVKANGKERHNKTEIPFLAMIAIALGIAA 117

Query: 119 IATLASIGNKPILGSTFRPQILAEXXXXXXXXXXXXXXXXXXXXYSVILPEYAPGWVYFW 178
           +AT+ASI  +PILGS    QIL++                    +SVI+P+ APGW+YFW
Sbjct: 118 LATIASIRQQPILGSPSGLQILSDGSSSSAVAPVAVGFTFKVFGFSVIIPQCAPGWIYFW 177

Query: 179 LLMAAGCGLFISEEALNIWVGISIARLLSLDGTWQSLAESFSRNASYIISTVLWVYWGVC 238
           LLMAAGCGLFISEEALNIWVG SIARLLSLDGTWQS AESFSRNA YIISTVLWVYWGVC
Sbjct: 178 LLMAAGCGLFISEEALNIWVGTSIARLLSLDGTWQSFAESFSRNAPYIISTVLWVYWGVC 237

Query: 239 ISDLIPFYLGKLFRQSGVSGDVSSKLGVGKEKALEITNVVQKYGNLVGFVERFSLGVRNP 298
           ISD+IPFYLGKLFRQSG S DV+S+LG+GKEKA+EIT+VVQKYGNL+GFVERFSLGVRNP
Sbjct: 238 ISDMIPFYLGKLFRQSGASADVTSRLGIGKEKAIEITDVVQKYGNLIGFVERFSLGVRNP 297

Query: 299 TAFLAGALGISPNYFFAGVCCGSLFTLPIQLGIGFLLRERPMFALATVATVVGFWTIFPY 358
           TAFLAGALGISP  FFAGVC G LFTL IQLGIGFLLRERP+FALATVATV+G WTIFPY
Sbjct: 298 TAFLAGALGISPELFFAGVCGGGLFTLSIQLGIGFLLRERPIFALATVATVMGIWTIFPY 357

Query: 359 AVAASTALFFYLRRRYLS 376
           AVAASTALFFY+RR+YLS
Sbjct: 358 AVAASTALFFYVRRKYLS 375