Miyakogusa Predicted Gene
- Lj0g3v0250179.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0250179.1 Non Characterized Hit- tr|I1MYC7|I1MYC7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,81.48,6e-16,seg,NULL,CUFF.16373.1
(92 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g084860.1 | S1 RNA-binding domain protein | HC | chr3:3833... 61 2e-10
>Medtr3g084860.1 | S1 RNA-binding domain protein | HC |
chr3:38332018-38337733 | 20130731
Length = 399
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 37/54 (68%)
Query: 1 MKQLEEDPLLETLDKVIPQXXXXXXXXXXXXXXXXIEPLPGLESILEELLQEDG 54
+KQLEEDPLLETLDKVI Q I+PLPGL++ILEELLQEDG
Sbjct: 276 IKQLEEDPLLETLDKVIRQDGSGVPNSISSTTSSPIDPLPGLDTILEELLQEDG 329