Miyakogusa Predicted Gene

Lj0g3v0249789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249789.1 Non Characterized Hit- tr|F6GVX5|F6GVX5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,53.42,0.000000000000002,seg,NULL,CUFF.16336.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g073360.1 | vacuolar protein sorting-associated protein VP...   148   1e-36
Medtr3g009180.1 | vacuolar protein sorting-associated protein VP...    85   1e-17

>Medtr3g073360.1 | vacuolar protein sorting-associated protein
          VPS9 | HC | chr3:33082097-33077957 | 20130731
          Length = 478

 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 75/80 (93%)

Query: 1  MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNAPDPDRDSAAVQEFLANMEAA 60
          MENAD   GLHDFLERMRQPAAADFVKAIKSFIVSFSN+ PDP+RDS AVQ+FLANMEAA
Sbjct: 1  MENADASSGLHDFLERMRQPAAADFVKAIKSFIVSFSNHGPDPERDSDAVQDFLANMEAA 60

Query: 61 FKAHPLWAGCSEEELESAGE 80
          FKAHPLWAGCS++ELESAGE
Sbjct: 61 FKAHPLWAGCSDDELESAGE 80


>Medtr3g009180.1 | vacuolar protein sorting-associated protein
          VPS9 | HC | chr3:1829947-1834344 | 20130731
          Length = 391

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 11 HDFLERMRQPAAADFVKAIKSFIVSFSNNAPDPDRDSAAVQEFLANMEAAFKAHPLWAGC 70
          HDFL RMR P++ D V+AIKSFIVSFS   P P+ D   VQ+F  +ME A + HPLWA  
Sbjct: 14 HDFLHRMRHPSSLDLVRAIKSFIVSFSFYQPKPENDGRRVQDFFLSMEVAIRNHPLWATA 73

Query: 71 SEEELESAGE 80
          +EE+++ A E
Sbjct: 74 TEEDIDCAME 83