Miyakogusa Predicted Gene

Lj0g3v0249659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249659.1 Non Characterized Hit- tr|D7MDR2|D7MDR2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,33.51,3e-17,seg,NULL,CUFF.16330.1
         (211 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091610.1 | VAMP-like protein, putative | HC | chr3:416983...    83   2e-16

>Medtr3g091610.1 | VAMP-like protein, putative | HC |
           chr3:41698304-41699753 | 20130731
          Length = 232

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 78/178 (43%), Gaps = 37/178 (20%)

Query: 41  KSQTLAFLHRIRSSLTETLHPLKDXXXXXXXXXXXXXXXXQTQFDLILREILHL------ 94
           KS  + FL+RIRSSL ETL+   +                Q QFD +L E L+       
Sbjct: 85  KSHAITFLNRIRSSLIETLNKNDNFTPFSL----------QPQFDSVLNETLNYYDLSPN 134

Query: 95  -DDGSTRSPPPAVVGVPHGEGLKKKKRVVDSAAVAANGTDAKDRDLTTAAAMVDVNDDLV 153
            D+G +  P    +    GEGLKKKKRVVD         DAK+      +AMVD++ D  
Sbjct: 135 SDNGKSSQPTTLPLLGNSGEGLKKKKRVVD---------DAKE------SAMVDLSSD-- 177

Query: 154 SLPAGGTKGVPGXXXXXXXXXXXXXXXXXXXXXXXXFVCAVLFVIWLWVCSGFKCMTY 211
               G                               FVCAVLFVIWLWVCSGF+CM Y
Sbjct: 178 ---DGAVLCPFNKVNDRQKAKHIWKKHVWIVLLLDLFVCAVLFVIWLWVCSGFQCMAY 232