Miyakogusa Predicted Gene
- Lj0g3v0249129.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0249129.1 tr|Q9LEU5|Q9LEU5_ARATH Cylicin-related protein
OS=Arabidopsis thaliana GN=T30N20_220 PE=2
SV=1,53.85,3e-19,Tudor/PWWP/MBT,NULL; no description,NULL;
LBR_tudor,Lamin-B receptor of TUDOR domain; ANDROGEN
INDUC,NODE_25720_length_605_cov_193.783478.path2.1
(112 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g014270.1 | lamin-B receptor of tudor domain protein | HC ... 142 5e-35
Medtr3g106100.1 | nucleic acid-binding protein, putative | HC | ... 128 1e-30
Medtr2g027090.1 | sister chromatid cohesion PDS5-like protein | ... 82 2e-16
Medtr4g006875.1 | sister chromatid cohesion PDS5-like protein | ... 77 4e-15
Medtr4g006875.2 | sister chromatid cohesion PDS5-like protein | ... 77 4e-15
Medtr4g134080.3 | sister chromatid cohesion PDS5-like protein | ... 77 4e-15
Medtr4g134080.1 | sister chromatid cohesion PDS5-like protein | ... 77 5e-15
Medtr4g134080.2 | sister chromatid cohesion PDS5-like protein | ... 77 5e-15
Medtr1g010290.1 | enhancer of polycomb-like transcription factor... 58 2e-09
Medtr7g021365.1 | histone-lysine N-methyltransferase ATX2-like p... 57 3e-09
Medtr7g021365.2 | histone-lysine N-methyltransferase ATX2-like p... 57 3e-09
Medtr7g021365.3 | histone-lysine N-methyltransferase ATX2-like p... 57 4e-09
Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC | c... 56 8e-09
>Medtr1g014270.1 | lamin-B receptor of tudor domain protein | HC |
chr1:3029508-3039200 | 20130731
Length = 930
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 87/107 (81%), Gaps = 1/107 (0%)
Query: 1 MTVYSPRSGTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDR 60
+TV S +S TK+TK E++EE P T+ KRKRTPGKEK SDTKK ++LVG RVKVWWP+D
Sbjct: 601 VTVSSLKSATKTTKDEHSEETPKTTLKRKRTPGKEKGSDTKKNDQSLVGKRVKVWWPDDN 660
Query: 61 EFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 107
FY GVV+SFDS+ KKHKVLYDDGDEE LN +EEK+ ++ + D+DAD
Sbjct: 661 MFYKGVVDSFDSSTKKHKVLYDDGDEEILNFKEEKYEIV-EVDADAD 706
>Medtr3g106100.1 | nucleic acid-binding protein, putative | HC |
chr3:48971316-48964581 | 20130731
Length = 802
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 3 VYSPRSGTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREF 62
V SPRS KS++ E EE +T+ KRK G++ ESD ++ +NLVG+R++VWWP+DR+F
Sbjct: 487 VSSPRSDIKSSEDEKLEETTMTNGKRKHASGRKNESDIMEHDQNLVGVRLEVWWPKDRQF 546
Query: 63 YTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 107
Y GV+ SFDS +KKHKV+YDDG+ E LNL EKW VI +ADSDAD
Sbjct: 547 YKGVIESFDSRKKKHKVVYDDGEVEVLNLAREKWNVI-EADSDAD 590
>Medtr2g027090.1 | sister chromatid cohesion PDS5-like protein | HC |
chr2:9853017-9871224 | 20130731
Length = 1683
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 11/76 (14%)
Query: 34 KEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLRE 93
KE ESD E+L+G RVKVWWP D++FY G V S+DS+++KH +LYDDG+ E L L +
Sbjct: 1358 KEGESD----AEDLIGCRVKVWWPLDKKFYKGTVQSYDSSKRKHAILYDDGEVEKLCLEK 1413
Query: 94 EKWGVIKKADSDADGG 109
E+W +I DGG
Sbjct: 1414 ERWELI-------DGG 1422
>Medtr4g006875.1 | sister chromatid cohesion PDS5-like protein | HC
| chr4:842728-848441 | 20130731
Length = 761
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 36 KESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK 95
K +++ G +LVG R+KVWWP D+ +Y G V+++D KHKVLYDDG EE +NL++ +
Sbjct: 677 KAQESEDLGNSLVGKRIKVWWPLDKTYYEGAVSAYDHVNGKHKVLYDDGVEEQINLKKHR 736
Query: 96 WGVIKKADSDADGGRRK 112
W + + D GR+K
Sbjct: 737 WE-LADVNVSPDKGRKK 752
>Medtr4g006875.2 | sister chromatid cohesion PDS5-like protein | HC
| chr4:842674-848397 | 20130731
Length = 799
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 36 KESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK 95
K +++ G +LVG R+KVWWP D+ +Y G V+++D KHKVLYDDG EE +NL++ +
Sbjct: 715 KAQESEDLGNSLVGKRIKVWWPLDKTYYEGAVSAYDHVNGKHKVLYDDGVEEQINLKKHR 774
Query: 96 WGVIKKADSDADGGRRK 112
W + + D GR+K
Sbjct: 775 WE-LADVNVSPDKGRKK 790
>Medtr4g134080.3 | sister chromatid cohesion PDS5-like protein | HC |
chr4:56119254-56132113 | 20130731
Length = 1667
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 6/79 (7%)
Query: 27 KRKRTPGKEKESDTKKYGE----NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYD 82
KRKR G K + K GE +L+G R+K+WWP D+++Y G + S+DS ++KH +LY+
Sbjct: 1361 KRKRVAGLTKCA--MKRGEIDSEDLIGCRIKIWWPTDKKYYGGTIKSYDSLKRKHVILYE 1418
Query: 83 DGDEETLNLREEKWGVIKK 101
DGD E L L +E+W ++ K
Sbjct: 1419 DGDVEILRLEKERWELLDK 1437
>Medtr4g134080.1 | sister chromatid cohesion PDS5-like protein | HC |
chr4:56119240-56132121 | 20130731
Length = 1660
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 6/79 (7%)
Query: 27 KRKRTPGKEKESDTKKYGE----NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYD 82
KRKR G K + K GE +L+G R+K+WWP D+++Y G + S+DS ++KH +LY+
Sbjct: 1353 KRKRVAGLTKCA--MKRGEIDSEDLIGCRIKIWWPTDKKYYGGTIKSYDSLKRKHVILYE 1410
Query: 83 DGDEETLNLREEKWGVIKK 101
DGD E L L +E+W ++ K
Sbjct: 1411 DGDVEILRLEKERWELLDK 1429
>Medtr4g134080.2 | sister chromatid cohesion PDS5-like protein | HC |
chr4:56119398-56132067 | 20130731
Length = 1657
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 6/79 (7%)
Query: 27 KRKRTPGKEKESDTKKYGE----NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYD 82
KRKR G K + K GE +L+G R+K+WWP D+++Y G + S+DS ++KH +LY+
Sbjct: 1353 KRKRVAGLTKCA--MKRGEIDSEDLIGCRIKIWWPTDKKYYGGTIKSYDSLKRKHVILYE 1410
Query: 83 DGDEETLNLREEKWGVIKK 101
DGD E L L +E+W ++ K
Sbjct: 1411 DGDVEILRLEKERWELLDK 1429
>Medtr1g010290.1 | enhancer of polycomb-like transcription factor
protein | HC | chr1:1894865-1888016 | 20130731
Length = 1660
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 51 RVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVI---KKADSDAD 107
R+KV+WP D+ +Y G+VN +D A++ H + YDD DEE +NL+ E++ ++ + A
Sbjct: 359 RIKVFWPLDQSWYYGLVNDYDEAQRLHHIKYDDRDEEWINLQTERFKLLLLRNEVPGRAK 418
Query: 108 GGR 110
GGR
Sbjct: 419 GGR 421
>Medtr7g021365.1 | histone-lysine N-methyltransferase ATX2-like
protein | HC | chr7:6764175-6749832 | 20130731
Length = 1069
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 45 ENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREE 94
E VGL+ KV+WP D + YTG+V S+D K H + YDDG+EE L L E
Sbjct: 198 EAFVGLKCKVYWPMDLKSYTGLVKSYDREAKIHHIEYDDGEEENLILSNE 247
>Medtr7g021365.2 | histone-lysine N-methyltransferase ATX2-like
protein | HC | chr7:6764175-6749832 | 20130731
Length = 1069
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 45 ENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREE 94
E VGL+ KV+WP D + YTG+V S+D K H + YDDG+EE L L E
Sbjct: 198 EAFVGLKCKVYWPMDLKSYTGLVKSYDREAKIHHIEYDDGEEENLILSNE 247
>Medtr7g021365.3 | histone-lysine N-methyltransferase ATX2-like
protein | HC | chr7:6764175-6755447 | 20130731
Length = 864
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 45 ENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREE 94
E VGL+ KV+WP D + YTG+V S+D K H + YDDG+EE L L E
Sbjct: 198 EAFVGLKCKVYWPMDLKSYTGLVKSYDREAKIHHIEYDDGEEENLILSNE 247
>Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC |
chr7:44767037-44759016 | 20130731
Length = 1280
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 47 LVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADS 104
+G R++V+WP D +Y G V SFD+ KH++ YDD +EE+++L +EK I+ + S
Sbjct: 90 FIGKRIRVYWPLDEAWYEGTVKSFDTVTSKHRIRYDDDEEESIDLSKEKIEWIQDSSS 147