Miyakogusa Predicted Gene

Lj0g3v0249079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249079.1 tr|G7I4G2|G7I4G2_MEDTR FAR1-related protein
OS=Medicago truncatula GN=MTR_1g019850 PE=4 SV=1,68.49,3e-17,FAR1,FAR1
DNA binding domain,CUFF.17567.1
         (255 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0853s0010.1 | FAR1 DNA-binding domain protein | LC | scaffo...   109   3e-24
Medtr0734s0010.1 | FAR1-related sequence protein, putative | LC ...    96   3e-20
Medtr1g019850.1 | FAR1 DNA-binding domain protein | LC | chr1:60...    95   8e-20

>Medtr0853s0010.1 | FAR1 DNA-binding domain protein | LC |
           scaffold0853:1237-1737 | 20130731
          Length = 166

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 61/73 (83%), Gaps = 1/73 (1%)

Query: 3   KVRKRCSTSRTDCKASLVVSKARKRHNWAIVSFNNDHNHIMVSPKSVKYLRCHKEGMSVA 62
           K +K+CSTSRTDCKA+LVVSKA+ R  W I++FNN HNH MVSPKS+ YLRCHK+ M  A
Sbjct: 87  KSKKKCSTSRTDCKATLVVSKAKMRPKWTIITFNNTHNHAMVSPKSINYLRCHKK-MGGA 145

Query: 63  AKNLVEKFHQDGL 75
           AKNLVE+F Q+GL
Sbjct: 146 AKNLVEQFDQEGL 158


>Medtr0734s0010.1 | FAR1-related sequence protein, putative | LC |
           scaffold0734:635-1200 | 20130731
          Length = 188

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 19/140 (13%)

Query: 112 DANKNVGFV--GGETNLVSERDDLATLRGMHVHRLLMSLADLAAKSEKIDKFISSQLEEI 169
           DANK V F+  G ++   S   + +TL+ +HVH+    L DLAAKSEKI K ISS LEE 
Sbjct: 32  DANKGVVFIEDGPKS---SSTGNSSTLQSLHVHKQASLLPDLAAKSEKIYKLISSDLEET 88

Query: 170 YKKASMMVSEMQSSKDILLSETSCQGFIMDEQVNEEPELNIKDPIMSQTR---------- 219
           YKKA +M +E+ +  DI+  + SCQ  I  EQ +E  E  I+DP+ SQT+          
Sbjct: 89  YKKALIMEAELDNESDIIPPDASCQNLI-HEQPSESSEPIIRDPLPSQTKGRKKDSIKET 147

Query: 220 ---RTKSSLELSMNRPSVNK 236
              R KSSLELS+NR +V +
Sbjct: 148 QNGRIKSSLELSVNRTTVKR 167


>Medtr1g019850.1 | FAR1 DNA-binding domain protein | LC |
           chr1:6058875-6060267 | 20130731
          Length = 237

 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 56/73 (76%), Gaps = 2/73 (2%)

Query: 5   RKRCSTSRTDCKASLVVSKARKRHNWAIVSFNNDHNHIMVSPKSVKYLRCHKEGMSVAAK 64
           RKR STSRTDCKASL +SKA KR  W I S NN HNH MVSPKSV YLR HK+ M  A K
Sbjct: 128 RKR-STSRTDCKASLTISKAGKRGKWVIKSINNVHNHGMVSPKSVAYLRSHKK-MIAATK 185

Query: 65  NLVEKFHQDGLPT 77
           +LVEKF ++G+PT
Sbjct: 186 SLVEKFDEEGVPT 198