Miyakogusa Predicted Gene

Lj0g3v0248799.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0248799.1 Non Characterized Hit- tr|A5BPZ4|A5BPZ4_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,50.11,0,plant
mutator transposase zinc finger,Zinc finger, PMZ-type; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NA,gene.g19379.t1.1
         (489 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g051425.1 | FAR1 DNA-binding domain protein | HC | chr6:17...   109   7e-24
Medtr0558s0020.1 | FAR1 DNA-binding domain protein | HC | scaffo...    86   8e-17
Medtr8g446020.1 | FAR1-related sequence protein, putative | HC |...    86   1e-16
Medtr6g090505.1 | FAR1 DNA-binding domain protein | HC | chr6:34...    85   2e-16
Medtr6g022070.1 | hypothetical protein | LC | chr6:7671087-76698...    79   1e-14
Medtr1g086270.1 | far-red impaired response protein, putative | ...    77   4e-14
Medtr4g035820.1 | FAR1 DNA-binding domain protein | LC | chr4:12...    54   4e-07
Medtr7g446510.1 | hypothetical protein | LC | chr7:15863528-1586...    54   4e-07
Medtr7g446480.1 | hypothetical protein | LC | chr7:15845592-1584...    52   1e-06
Medtr0337s0060.1 | hypothetical protein | HC | scaffold0337:1265...    51   2e-06

>Medtr6g051425.1 | FAR1 DNA-binding domain protein | HC |
           chr6:17965556-17964534 | 20130731
          Length = 340

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 73/103 (70%)

Query: 2   KEMEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCF 61
           K ++ G+A +L+++ +++Q ++  F+Y +QLD +S++TN+FW D K  VDY  FGDVV F
Sbjct: 189 KLIKGGDAQSLINHLQNRQAQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVVF 248

Query: 62  DTTYRTNKNLRPLAPFIGFNHHRESVLFGAALLYDETAESFGW 104
           DTTYRTN      APF+G  HH ++V+FG  LL DET+  FG+
Sbjct: 249 DTTYRTNTYDLICAPFVGVIHHLQNVMFGCVLLSDETSCVFGF 291


>Medtr0558s0020.1 | FAR1 DNA-binding domain protein | HC |
           scaffold0558:3043-3933 | 20130731
          Length = 296

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%)

Query: 2   KEMEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCF 61
           KEM  GEA  +  +F+++    PSF+Y+IQ+D    I +IFWAD  M +DY+ FGDV+  
Sbjct: 223 KEMVVGEATIIQEFFRNEALSKPSFYYDIQVDAAENIASIFWADGIMQLDYSLFGDVISL 282

Query: 62  DTTYRTNKNLRPLA 75
           DTTYRTN   RPL 
Sbjct: 283 DTTYRTNNQYRPLG 296


>Medtr8g446020.1 | FAR1-related sequence protein, putative | HC |
           chr8:17591916-17592802 | 20130731
          Length = 256

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%)

Query: 2   KEMEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCF 61
           KEM  GEA  +  +F+++    PSF+Y+IQ+D    I +IFWAD  M +DY+ FGDV+ F
Sbjct: 183 KEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYSLFGDVISF 242

Query: 62  DTTYRTNKNLRPLA 75
           DTTYRTN    PL 
Sbjct: 243 DTTYRTNNQYLPLG 256


>Medtr6g090505.1 | FAR1 DNA-binding domain protein | HC |
           chr6:34400401-34402867 | 20130731
          Length = 364

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 10/121 (8%)

Query: 2   KEMEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCF 61
           KEM  GEA  +  +F+++    PSF+Y+IQ+D    IT+IF A+  M +DY+ FGDV+ F
Sbjct: 158 KEMVVGEATIIQEFFRNEALSKPSFYYDIQVDAAEDITSIFLANGIMQLDYSLFGDVISF 217

Query: 62  DTTYRTNKNLRPLAPFIGFNHHRESVLF----------GAALLYDETAESFGWLFKTFLK 111
           DTTYRTN   RPL     F+++ + ++           G + L +  +ESF    + FL+
Sbjct: 218 DTTYRTNNQYRPLDDESDFDYNWDQMMKNCFNGRPTSDGLSKLTEILSESFNAFLRGFLQ 277

Query: 112 A 112
            
Sbjct: 278 P 278


>Medtr6g022070.1 | hypothetical protein | LC | chr6:7671087-7669835
           | 20130731
          Length = 337

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 7/145 (4%)

Query: 129 MAKAIAEVFPESYHRLCLWHLFQNALKNLNHAFKNSDSFAGELRNCIY-NFEYEDDFLNA 187
           M  AI  VFP  +H LC  HL +NA  N+      +  F  + + C++ +F+ E+ F + 
Sbjct: 1   MRNAIRTVFPNDHHHLCAKHLARNAASNIK-----TPQFVPKFKQCMFGDFDIEE-FESR 54

Query: 188 WKSLLDKHNLQENKWMQDLFKKKEKWALVYGRHTFSAGATTTQLSESVNGRLRLYMKSTF 247
           W++   +  L+ NKW+ +L++K+ + +  +   TF AG  TT   E ++     Y+    
Sbjct: 55  WENFFGEFGLENNKWIHELYEKRNQCSTAHIWGTFYAGFRTTSRWEGLHSEFGKYVSVLS 114

Query: 248 NVLEFFRNFERLLEDMRYKEIESNY 272
           N+++F  +F R L   RY+EIE++Y
Sbjct: 115 NLIDFLNHFLRWLNYERYREIEADY 139


>Medtr1g086270.1 | far-red impaired response protein, putative | LC
           | chr1:38615225-38615594 | 20130731
          Length = 109

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 51/80 (63%)

Query: 129 MAKAIAEVFPESYHRLCLWHLFQNALKNLNHAFKNSDSFAGELRNCIYNFEYEDDFLNAW 188
           M KAI+   PE++H LC WH+ +NAL+++NH ++ S  F  +   CI   E E +F +AW
Sbjct: 1   MTKAISLTMPETFHGLCTWHIRENALRHVNHLYQRSPKFCSDFEACIDLHEEESEFFSAW 60

Query: 189 KSLLDKHNLQENKWMQDLFK 208
             LL +HN+ ++ W+  +F+
Sbjct: 61  DGLLVEHNVPDDSWLHTIFR 80


>Medtr4g035820.1 | FAR1 DNA-binding domain protein | LC |
           chr4:12632859-12628018 | 20130731
          Length = 668

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 2   KEMEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCF 61
           K++E  +   LL Y +  +  +  F Y   LD + ++ +IFW+ A     Y  +GDVV F
Sbjct: 247 KKIEGSDVMDLLKYCEGAKKTSSKFQYAYTLDEERRLEHIFWSSASCFDWYQKYGDVVVF 306

Query: 62  DTTYRTNKNLRPLAPFIGFNHHRESVL---FGAALLYDETAESFGWLFKTFLKAMCGKNP 118
           DTTY+ N    P   F G N+   + L   F   +     +ES     K F+      N 
Sbjct: 307 DTTYKVNSYEMPFGIFCG-NYWALAYLRDHFFGGMTTTGRSESINAFIKRFI------NS 359

Query: 119 KTIFTDQDAAMAKAIAEVFPESYHRLCL 146
            T  TD    +  AI ++  +  H + L
Sbjct: 360 HTSLTDFAKQVDVAIDDIKQKEDHDIML 387


>Medtr7g446510.1 | hypothetical protein | LC |
           chr7:15863528-15861541 | 20130731
          Length = 333

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%)

Query: 4   MEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCFDT 63
           +++G+ Y  L+Y   K + +P  F       D ++   FWAD     DY  FGDVV F+T
Sbjct: 250 IKDGDIYAALNYLNVKSSTDPHSFGVYFSTDDGRLKCPFWADGTSRSDYFCFGDVVAFNT 309

Query: 64  TYRTNKNLRPLAPFIGFNHH 83
            Y+ NK    L    G NHH
Sbjct: 310 MYKKNKYKYLLVILSGCNHH 329


>Medtr7g446480.1 | hypothetical protein | LC |
           chr7:15845592-15844432 | 20130731
          Length = 318

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%)

Query: 4   MEEGEAYTLLHYFKSKQTENPSFFYEIQLDVDSQITNIFWADAKMVVDYAYFGDVVCFDT 63
           +++G+ Y  L+Y   K + +P  F       D ++   FWAD     DY  FGDVV F+T
Sbjct: 235 IKDGDIYAALNYLNVKSSTDPHSFGVYFSTDDGRLKCPFWADGTSRSDYFCFGDVVAFNT 294

Query: 64  TYRTNKNLRPLAPFIGFNHH 83
            Y+ NK    L    G NHH
Sbjct: 295 MYKKNKYKYLLVILSGCNHH 314


>Medtr0337s0060.1 | hypothetical protein | HC |
           scaffold0337:12659-13668 | 20130731
          Length = 239

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 30/170 (17%)

Query: 225 GATTTQLSESVNGRLRLYMKSTFNVLEFFRNFERLLEDMRYKEIESNYEMSQKMPSLNM- 283
           G  TTQLSES N  LR +++   +++ FF +F  +++ MR    E +++ +      N  
Sbjct: 21  GPKTTQLSESCNAFLRGFLQPDHSLVRFFSHFNIVVQRMRDNHAEFDFKAANTRTKNNYP 80

Query: 284 NILLLKSARDVFTPAIFSLVRAQYEKSCNIVLKV-CNQHADLYEYEVCVFGSTRQHKVTF 342
           N  L++S    +TPA F+ +  QY+ S     +    + + L  +E    G   +  VT 
Sbjct: 81  NSQLMRSVVIKYTPACFAFIHRQYDLSFKYYYEEDTTKGSALNNFE--DHGRLDERVVTV 138

Query: 343 NPKDQSVECSCQLFQFIGILCSHALRILNHLNIIVVPARYILKRWTKHAR 392
           + + +S  CSC+                          +Y+LK WT+  R
Sbjct: 139 DIRSKSFSCSCR--------------------------QYVLKHWTRDVR 162