Miyakogusa Predicted Gene

Lj0g3v0248159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0248159.1 Non Characterized Hit- tr|B8BNV9|B8BNV9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,40.87,0.00000000000001,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.16226.1
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g063090.1 | hypothetical protein | LC | chr8:26417759-2642...   283   1e-76
Medtr7g033700.1 | hypothetical protein | HC | chr7:12288639-1229...   282   3e-76
Medtr7g033685.2 | RNA-directed DNA methylation protein | LC | ch...   246   1e-65
Medtr7g033685.1 | RNA-directed DNA methylation protein | LC | ch...   225   3e-59
Medtr7g033685.3 | RNA-directed DNA methylation protein | LC | ch...   122   3e-28
Medtr7g033685.4 | RNA-directed DNA methylation protein | LC | ch...   121   7e-28

>Medtr8g063090.1 | hypothetical protein | LC |
           chr8:26417759-26423230 | 20130731
          Length = 356

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/225 (69%), Positives = 178/225 (79%), Gaps = 14/225 (6%)

Query: 26  QSPLDAFWLEINERPLKRSLLDFGNLSISDSAQ---KVEFNNKKVFVQRVETISSSEVTL 82
            SPLDAFWLEINERP KR LLDFGNLSIS S      VE +NKKV VQ VETISSS+VTL
Sbjct: 26  HSPLDAFWLEINERPFKRPLLDFGNLSISQSQSSSQNVEIHNKKVLVQHVETISSSDVTL 85

Query: 83  DIVQSFVDPGSSRASESKSNIEQRKSFFKKDNRARKQDQLLSKAKQDKESLAKDARFEQI 142
           DIVQSFV+PGS  ASESK N+ +RK+FFKK    +KQDQLL KAKQ+K+  AKDARFEQI
Sbjct: 86  DIVQSFVEPGSRSASESKPNVVERKNFFKK---VKKQDQLLVKAKQEKQFSAKDARFEQI 142

Query: 143 WKSRKGNKETEHEKALQEICNFYDIVRV-------EEQQKEMTLEDQILLSSYLPMLREF 195
           WKSRK NK T  E  LQEIC FYDIVRV       E QQ++++LEDQ LLSS+LP+LRE 
Sbjct: 143 WKSRKVNKATADENVLQEICQFYDIVRVDSEENIKEVQQEDISLEDQRLLSSFLPLLREV 202

Query: 196 IPDAASEIEADMVAHSKKEDYVYDLYTVNDEVDV-EDSSYSYPLV 239
           IP+AA+E+EAD+  HSK+EDYVYDLYTV DE  V E+SS+SYPLV
Sbjct: 203 IPNAAAEVEADISDHSKQEDYVYDLYTVTDETIVEENSSHSYPLV 247


>Medtr7g033700.1 | hypothetical protein | HC |
           chr7:12288639-12296017 | 20130731
          Length = 369

 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 180/228 (78%), Gaps = 17/228 (7%)

Query: 26  QSPLDAFWLEINERPLKRSLLDFGNLSISDSA---QKVEFNNKKVFVQRVETISSSEVTL 82
            SPLDAFWLEINERP KR   DFGNLSISDS+   Q+VE +NKKV VQ VETISSSEVTL
Sbjct: 28  HSPLDAFWLEINERPFKRPFFDFGNLSISDSSSSSQQVEIHNKKVLVQHVETISSSEVTL 87

Query: 83  DIVQSFVDPGSSRASESKSNIEQRKSFFKKDNRARKQDQLLSKAKQDKESLAKDARFEQI 142
           DIVQSFV+P S  ASESKS +E+RK+FF+  N   KQDQL  KAKQ+KES AKDARFEQI
Sbjct: 88  DIVQSFVEPASRSASESKSKVEERKNFFRNVN---KQDQLFFKAKQEKESSAKDARFEQI 144

Query: 143 WKSRKGNKETEHEKALQEICNFYDIVRVEE-------QQKEMTLEDQILLSSYLPMLREF 195
           WKSRK NK T  E ALQEIC FYDIVRV+        QQ++M+LEDQ LLSS+LP+LRE 
Sbjct: 145 WKSRKVNKGTADENALQEICQFYDIVRVDSEEKVNQVQQEDMSLEDQKLLSSFLPLLREV 204

Query: 196 IPDAASEIEADMVAHSKK---EDYVYDLYTVNDEVDV-EDSSYSYPLV 239
           IP+AA+EIE D+ AHSK+   EDYVYDLYTV DE  V EDSS+SYPLV
Sbjct: 205 IPNAAAEIEDDISAHSKQEYIEDYVYDLYTVTDETIVEEDSSHSYPLV 252


>Medtr7g033685.2 | RNA-directed DNA methylation protein | LC |
           chr7:12279339-12273128 | 20130731
          Length = 474

 Score =  246 bits (629), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 170/224 (75%), Gaps = 15/224 (6%)

Query: 26  QSPLDAFWLEINERPLKRSLLDFGNLSISDSAQKVEFNNKKVFVQRVETISSSEVTLDIV 85
           Q PLDAFWLEINERPLKR LLDFGNLSI++S+Q  +F+NKKV VQ ++TISSSEVT+DIV
Sbjct: 101 QPPLDAFWLEINERPLKRPLLDFGNLSIANSSQD-KFHNKKVLVQHLKTISSSEVTIDIV 159

Query: 86  QSFVDPGSSRASESKSNIEQRKSFFKKDNRARKQDQLLSKAKQDKESLAKDARFEQIWKS 145
           +SF++P S  AS+S+S +E+RK+F     +  KQDQ L K  Q+KES AKDARFEQI K+
Sbjct: 160 RSFLEPRSRSASKSESKVEKRKNF----KKVNKQDQFLFKGNQEKESSAKDARFEQILKN 215

Query: 146 RKGNKETEHEKALQEICNFYDIVRV-------EEQQKEMTLEDQILLSSYLPMLREFIPD 198
           R   K+T  EKAL EIC+FYDIVR+       E QQ+++ LEDQ LL++++P+L + IP 
Sbjct: 216 RTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLEDQRLLANFMPLLIDVIPK 275

Query: 199 AASEIEADMVAHSKK--EDYVYDLYTVNDEVDV-EDSSYSYPLV 239
           AA+EIEAD   HS +  EDYVYDLYTV DE+   EDSS  YPL+
Sbjct: 276 AAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPLL 319


>Medtr7g033685.1 | RNA-directed DNA methylation protein | LC |
           chr7:12277220-12273128 | 20130731
          Length = 394

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 162/224 (72%), Gaps = 29/224 (12%)

Query: 26  QSPLDAFWLEINERPLKRSLLDFGNLSISDSAQKVEFNNKKVFVQRVETISSSEVTLDIV 85
           Q PLDAFWLEINERPLKR LLDFGNLSI++S+Q  +F+NKKV VQ ++TISSSEVT+DIV
Sbjct: 35  QPPLDAFWLEINERPLKRPLLDFGNLSIANSSQD-KFHNKKVLVQHLKTISSSEVTIDIV 93

Query: 86  QSFVDPGSSRASESKSNIEQRKSFFKKDNRARKQDQLLSKAKQDKESLAKDARFEQIWKS 145
           +SF++P S  AS+S+S +E+RK+ FKK N                 S AKDARFEQI K+
Sbjct: 94  RSFLEPRSRSASKSESKVEKRKN-FKKVN-----------------SSAKDARFEQILKN 135

Query: 146 RKGNKETEHEKALQEICNFYDIVRV-------EEQQKEMTLEDQILLSSYLPMLREFIPD 198
           R   K+T  EKAL EIC+FYDIVR+       E QQ+++ LEDQ LL++++P+L + IP 
Sbjct: 136 RTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLEDQRLLANFMPLLIDVIPK 195

Query: 199 AASEIEADMVAHSKK--EDYVYDLYTVNDEVDV-EDSSYSYPLV 239
           AA+EIEAD   HS +  EDYVYDLYTV DE+   EDSS  YPL+
Sbjct: 196 AAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPLL 239


>Medtr7g033685.3 | RNA-directed DNA methylation protein | LC |
           chr7:12274803-12273128 | 20130731
          Length = 278

 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 86/119 (72%), Gaps = 10/119 (8%)

Query: 131 ESLAKDARFEQIWKSRKGNKETEHEKALQEICNFYDIVRV-------EEQQKEMTLEDQI 183
           +S AKDARFEQI K+R   K+T  EKAL EIC+FYDIVR+       E QQ+++ LEDQ 
Sbjct: 7   QSSAKDARFEQILKNRTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLEDQR 66

Query: 184 LLSSYLPMLREFIPDAASEIEADMVAHSKK--EDYVYDLYTVNDEVDV-EDSSYSYPLV 239
           LL++++P+L + IP AA+EIEAD   HS +  EDYVYDLYTV DE+   EDSS  YPLV
Sbjct: 67  LLANFMPLLIDVIPKAAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPLV 125


>Medtr7g033685.4 | RNA-directed DNA methylation protein | LC |
           chr7:12274803-12273128 | 20130731
          Length = 280

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 86/119 (72%), Gaps = 10/119 (8%)

Query: 131 ESLAKDARFEQIWKSRKGNKETEHEKALQEICNFYDIVRV-------EEQQKEMTLEDQI 183
           +S AKDARFEQI K+R   K+T  EKAL EIC+FYDIVR+       E QQ+++ LEDQ 
Sbjct: 7   QSSAKDARFEQILKNRTAIKKTAAEKALHEICHFYDIVRIDCEEKIREVQQEDICLEDQR 66

Query: 184 LLSSYLPMLREFIPDAASEIEADMVAHSKK--EDYVYDLYTVNDEVDV-EDSSYSYPLV 239
           LL++++P+L + IP AA+EIEAD   HS +  EDYVYDLYTV DE+   EDSS  YPL+
Sbjct: 67  LLANFMPLLIDVIPKAAAEIEADTSVHSTQDTEDYVYDLYTVMDEMIFEEDSSCCYPLL 125