Miyakogusa Predicted Gene

Lj0g3v0247139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0247139.1 tr|H1WHI8|H1WHI8_9CYAN ATP-dependent Clp protease
adapter protein ClpS OS=Arthrospira sp. PCC 8005
G,57.5,3e-19,ClpS-like,Ribosomal protein L7/L12, C-terminal/adaptor
protein ClpS-like; seg,NULL; ClpS,Adaptor
pro,NODE_56140_length_803_cov_50.184307.path1.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g054770.1 | ATP-dependent Clp protease adaptor protein Clp...   263   6e-71
Medtr6g085050.1 | ATP-dependent Clp protease adaptor protein Clp...   194   3e-50

>Medtr5g054770.1 | ATP-dependent Clp protease adaptor protein ClpS |
           HC | chr5:22566023-22570033 | 20130731
          Length = 156

 Score =  263 bits (671), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 134/156 (85%)

Query: 1   MKSAICGRMGLSPNHVFAPGDKYSFCVGPCSNVCIPMXXXXXXXXXXXXXXEKPVIEKVS 60
           MKSAIC  MGLSPNH+F  GD+YSFC GP SN+C+PM              EKPVIEK +
Sbjct: 1   MKSAICRSMGLSPNHLFISGDRYSFCKGPYSNLCVPMAVLTKGSGKGGGILEKPVIEKAT 60

Query: 61  PGRESEFDLKKSRKSSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHN 120
           PGRESEFDLKKSRK++PPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHN
Sbjct: 61  PGRESEFDLKKSRKTAPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHN 120

Query: 121 GLSVVIICAQADAEDHCMQLRGNGLLSSIEPAGGGC 156
           G+SVVIICAQADAEDHCMQLRGNGLLSSIEPAG GC
Sbjct: 121 GMSVVIICAQADAEDHCMQLRGNGLLSSIEPAGDGC 156


>Medtr6g085050.1 | ATP-dependent Clp protease adaptor protein ClpS |
           HC | chr6:32052395-32049206 | 20130731
          Length = 160

 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 112/150 (74%), Gaps = 7/150 (4%)

Query: 11  LSPNHVF---APGDKY-SFCVGPCSNVCIPMXXXXXXXXXXXXXXEKPVIEKVSPGRESE 66
           +SPN +     PGDKY  F      +  + M              + P IEK +PGRESE
Sbjct: 14  ISPNQLLNASTPGDKYFGFKYSKDRSTVMTMVASGKGGGLLE---KPPTIEKTTPGRESE 70

Query: 67  FDLKKSRKSSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGLSVVI 126
           FDL+KS+K+SPPYRV+LHNDN+NKREYVVQVLMKVIPGMT+D AVN+MQEAH NGL+VVI
Sbjct: 71  FDLRKSKKTSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHINGLAVVI 130

Query: 127 ICAQADAEDHCMQLRGNGLLSSIEPAGGGC 156
           ICAQ DAEDHCMQLRGNGLLSSIEPA GGC
Sbjct: 131 ICAQVDAEDHCMQLRGNGLLSSIEPADGGC 160