Miyakogusa Predicted Gene

Lj0g3v0246539.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0246539.1 Non Characterized Hit- tr|D8TRD2|D8TRD2_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,40,7e-16,Pseudouridine synthase,Pseudouridine synthase, catalytic
domain; no description,Pseudouridine
syntha,NODE_50229_length_1121_cov_7.661909.path1.1
         (248 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g074620.1 | tRNA pseudouridine synthase | HC | chr5:317201...   317   7e-87
Medtr5g074640.1 | tRNA pseudouridine synthase | HC | chr5:317260...   264   5e-71
Medtr4g131270.1 | tRNA pseudouridine synthase A, related protein...    62   7e-10
Medtr4g131220.1 | tRNA pseudouridine synthase A, related protein...    62   7e-10
Medtr4g131200.1 | tRNA pseudouridine synthase | HC | chr4:547442...    61   9e-10

>Medtr5g074620.1 | tRNA pseudouridine synthase | HC |
           chr5:31720119-31716063 | 20130731
          Length = 483

 Score =  317 bits (812), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 161/248 (64%), Positives = 185/248 (74%), Gaps = 12/248 (4%)

Query: 1   MSNKTGXXXXXXXXXXXXXXXDVDDFVSTTLGDKDQXXXXXXXXXXNDFSHQNSSLVVRA 60
           MSN TG               D DD +S   G+ +Q           + S  NS   ++A
Sbjct: 248 MSNMTGSSSLVSACDSENEESDTDDSMS---GNGEQSHKS------QECSESNS---LKA 295

Query: 61  RWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEIKIWGDSFMLHQIRKMVGTAVA 120
           RWL+EPD ADRLN SHFRKI +CSCGKL+ LLG +Y+EI +WGDSFMLHQIRKMVGTAVA
Sbjct: 296 RWLHEPDAADRLNASHFRKILRCSCGKLETLLGYNYIEIDVWGDSFMLHQIRKMVGTAVA 355

Query: 121 VKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFSMRSSAGKFIRPEMVSLVESEP 180
           VKRN IP+DI  LSLIKF+RIVLP+APPEVLILRGN F M SS G + RPEMVS+VESE 
Sbjct: 356 VKRNSIPKDIFLLSLIKFSRIVLPIAPPEVLILRGNAFRMWSSGGSYTRPEMVSMVESEQ 415

Query: 181 ILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYSSFADAELDEVRMAWRTWKENF 240
           IL  V+EFYTSVMLPELSKFLDSSKSPW +WVE+LDKYSS  + +L+EVR AWRTWKENF
Sbjct: 416 ILKSVDEFYTSVMLPELSKFLDSSKSPWADWVEKLDKYSSIPNDQLEEVREAWRTWKENF 475

Query: 241 RAKSASDA 248
           RAK AS+A
Sbjct: 476 RAKPASEA 483


>Medtr5g074640.1 | tRNA pseudouridine synthase | HC |
           chr5:31726081-31722203 | 20130731
          Length = 501

 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 157/209 (75%)

Query: 32  GDKDQXXXXXXXXXXNDFSHQNSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRL 91
           G  D            +   Q+SS VVRA+WLYEPDEADRLN SHFR++ +CS GKL++ 
Sbjct: 285 GTSDSCEPVIETGNKGNLHDQSSSSVVRAKWLYEPDEADRLNASHFRRVFRCSSGKLEKS 344

Query: 92  LGKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVL 151
           +G  Y+EI I G+SFMLHQIRKMV TAVAVKR L+PRDI++LSL KF+RI+LPLAP EVL
Sbjct: 345 MGHSYIEIYIEGESFMLHQIRKMVATAVAVKRKLLPRDIITLSLSKFSRIILPLAPSEVL 404

Query: 152 ILRGNTFSMRSSAGKFIRPEMVSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEW 211
           +LRGN+FSMR+  G   RPEM ++VESE I   V++FY SVMLP++SKFLD S+ PWVEW
Sbjct: 405 LLRGNSFSMRTKPGNVTRPEMQTIVESEEINKVVDDFYRSVMLPQVSKFLDPSRVPWVEW 464

Query: 212 VERLDKYSSFADAELDEVRMAWRTWKENF 240
           +E+ D ++S  + +LDEVR A   WKENF
Sbjct: 465 IEKFDAHTSIPNDQLDEVRKARNLWKENF 493


>Medtr4g131270.1 | tRNA pseudouridine synthase A, related protein |
           HC | chr4:54768312-54766231 | 20130731
          Length = 530

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 93  GKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLI 152
           G ++V+ +I G SFMLHQIRKM+G AVA+ RN  P  ++  +L K   I +P AP   L 
Sbjct: 375 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 434

Query: 153 L 153
           L
Sbjct: 435 L 435


>Medtr4g131220.1 | tRNA pseudouridine synthase A, related protein |
           HC | chr4:54751590-54749272 | 20130731
          Length = 530

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 93  GKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLI 152
           G ++V+ +I G SFMLHQIRKM+G AVA+ RN  P  ++  +L K   I +P AP   L 
Sbjct: 375 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 434

Query: 153 L 153
           L
Sbjct: 435 L 435


>Medtr4g131200.1 | tRNA pseudouridine synthase | HC |
           chr4:54744263-54742890 | 20130731
          Length = 361

 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 93  GKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLI 152
           G ++V+ +I G SFMLHQIRKM+G AVA+ RN  P  ++  +L K   I +P AP   L 
Sbjct: 206 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 265

Query: 153 L 153
           L
Sbjct: 266 L 266